search for: hydrobiological

Hi, I'm astudent in hydrobiology and I actually work on river's discharge and try to extract from my data the seasonal and trend components. I use STL function but I have several problems in understanding what this function have done. I'd like to know what means the IQR results which gave me some % about the seasonal component, trend component and the remainder component.

Dear R developers, I've got an information from Prof. Ripley regarding a bug found with AdressSanitizer in one of our packages. It is now fixed, thank you for this information. Now, I would like to run AddressSanitizer myself before submitting the patched package to CRAN. Is there a recommendation of a suitable Linux distribution with gcc 4.8, ideally an ISO image or (even better) a

Hello, I want to do simulations with an external simulation model. For this purpose I wrote a R-script which makes the pre- and post-processing of the data (generate scenarios, analyze results). The R-script writes the input file for the simulation with e.g. write(x, file="test.dat", ncolumns=10) The problem is, however, that this command (and even constructions with cat) will add a

I have a problem, that the plot of mathematical formula sometimes crashes R on Linux (SuSE 6.2 and 7.0 on a Dual PIII/500 machine with 1GB RAM). The problem occurs for example in demo("graphics"), i.e. in the last part were the mathematical symbols are plotted. There are several circumstances to reproduce this segmentation fault, but the following is one of the most simple examples. The

Hi Kurt, I have started to look into this, and I need some guidance about how to prioritize my repairs. There are basically 4 categories of warnings from gfortran?s pedantic critique of my packages: 1. Some errant tab characters it doesn?t like, 2. Too many or too few continue statements 3. Horrible (and obsolescent) arithmetic and computed gotos 4. undeclared doubles and dubious

I have carried out a spatial interpolation (Kriging) using surf.gls() The contour plot looks very plausible and the image plot is o.k too. The problem is, hovever, that I need the vectorized isoplethes, as in contour(). Unfortunately, I found no solution to get the internal data from contour(). Is there a possibility to extract contour lines as x-y-polygon from a grid without hacking plot3d.c?

Hi all, we found, that R is not only *the* superior data analysis, graphics and statistics package, but it is also a general tool for implementing, running and teaching ecological models. Last week we held our second course "Modelling in Limnology" using R. Some material (code and docs) was produced for this purpose and may be interesting to someone else, so I put the tutorial

Hi Does anybody know of any R packages under Windows to produce video files from a sequence of R graphs -- e.g. in .wmv or avi format? Thanks David

Hi, Does any one knows how to include greek letters in plot labels and plot titles ? Thanks a lot paul --- [[alternative HTML version deleted]]

...etween 0 and 1) and "y" is the observed values (0 or 1). 1) Is anybody can tell me if this formula is statistically true? 2) Can someone tell me what is the formula of the likelihood between observed and predicted values for a gaussian model ? Thanks -- Christophe LOOTS PhD student - Hydrobiological modelling of fish habitats Sea Fisheries Laboratory - IFREMER Boulogne sur Mer 150, Quai Gambetta. BP 699 62321 Boulogne sur Mer- FRANCE T?l : +33(0)3 21 99 56 86 Fax : +33(0)3 21 99 56 01 E-mail : cloots at ifremer.fr http://www.ifremer.fr/drvboulogne/labo/equipe.htm

I need to solve a system of non-linear fourth-order differential equations. Is there a command which solves this system? Thanks in advance.

Dear R developers, I found a small issue while plotting contours of data containing both "usual" and "very small" numbers. It appeared with both R 3.0.1 and R-Devel on Windows, and I could reproduce it on Linux. Would it be possible to solve this before the upcoming release? Thanks a lot for developing this great software! Thomas Example: ######## set.seed(357) z1 <-

...t my algebra, see ?dnorm and take the log of the likelihood shown there for yourself. You're reinventing the wheel a bit here: -2*sum(dbinom(y,prob=phat,size=1,log=TRUE)) and -2*sum(dnorm(x,mean=mu,sd=sigma,log=TRUE)) will do what you want. Ben Bolker -- Christophe LOOTS PhD student - Hydrobiological modelling of fish habitats Sea Fisheries Laboratory - IFREMER Boulogne sur Mer 150, Quai Gambetta. BP 699 62321 Boulogne sur Mer- FRANCE T?l : +33(0)3 21 99 56 78 Fax : +33(0)3 21 99 56 01 E-mail : cloots at ifremer.fr http://www.ifremer.fr/drvboulogne/labo/equipe.htm

Hi, I have the same problem and, at a first look, the issues reported by the CRAN checks seemed easy to fix. However, after checking it again locally and on http://win-builder.r-project.org it appeared that GCC 4.9.3 (Windows, Rtools 3.4), same also on win-builder reports even more issues, especially legacy Fortran (mainly Roger's #2 and #3), but also "warning: ISO C forbids

Hi, I am almost new to R. Would any one show me (please include an example) how to clip a contour or image figure so that I only see the image or lines inside a selected area? Thank you very much Han -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info",

Dear List, Wonder if you have some thoughts on the following question using lsoda in desolve: I have the following data and function: require(deSolve) times <- c(0:24) tin  <- 0.5 D <- 400 V    <- 26.3 k <-0.056 k12  <- 0.197118 k21  <- 0.022665 yini <- c(dy1 = 0,dy2 = 0)  events <- data.frame(var = "dy1",time = c(10,15),value = c(200,100),method =

On 2 September 2016 at 14:54, Thomas Petzoldt wrote: | Hi, | | I have the same problem and, at a first look, the issues reported by the | CRAN checks seemed easy to fix. However, after checking it again locally | and on http://win-builder.r-project.org it appeared that GCC 4.9.3 | (Windows, Rtools 3.4), same also on win-builder reports even more | issues, especially legacy Fortran (mainly

Hi all, I think this question could be quite trivial, but I can?t find out the solution... How can you compute the statistic "mode" of a sample, in case it exists (as mode() returns the mode of an object)? I tried help.search("mode") but I couldn't find a clue... Any help would be much appreciated. Regards, Aurora

hi all i have another probably simple question. I have three variables say x, y and z. x and y are quite large and z is relative small. how can one plot the three variables on the same graph with two separate axis? (one for x and y and the other for z) e.g. x<-c(101,110,150,167,120) y<-c(120,135,175,95,200) z<-c(0.001, 0.15, 0.6, 0.8, 1) regards Allan

Hi - I am getting different results when I run the numerical integrator function lsoda (odesolve package) on a Mac and a PC. I am trying to simulating a system of 10 ODE's with two exogenous pulsed inputs to the system, and have had reasonably good success with many model parameter sets. Under some parameter sets, however, the simulations fail on the Mac (see error message below). The