Displaying 1 result from an estimated 1 matches for "hwetriangbf2".
2011 Oct 08
1
HWEBayes, swapping the homozygotes genotype frequencies
I evaluated the Bayes factor in the k=2 allele case with a "triangular"
prior under the null as in the example in the help file:
HWETriangBF2(nvec=c(88,10,2))
[1] 0.4580336
When I swap the n11 entry and n22 entry of nvec, I received totally
different Bayes factor:
>
> HWETriangBF2(nvec=c(2,10,88))
[1] 5.710153
>
In my understanding, defining the genotype frequency as n11 or n22 are
arbitrary.
So I was expecting the same v...