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rsub
2012 Feb 23
2
Advice on exploration of sub-clusters in hierarchical dendrogram
...from
which to derive the sub-clusters at a new given cutoff height.
I recently found in this page
http://manuals.bioinformatics.ucr.edu/home/R_BioCondManual
http://manuals.bioinformatics.ucr.edu/home/R_BioCondManual
the following code:
clid <- c(1,2)
ysub <- y[names(mycl[mycl%in%clid]),]
hrsub <- hclust(as.dist(1-cor(t(ysub), method="pearson")),
method="complete") # Select sub-cluster number (here: clid=c(1,2)) and
generate corresponding dendrogram.
Even with this given example I am afraid I can't work my way around.
So I guess in my case I could grab all the...