search for: hivnet

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2003 Aug 07
2
segmentation fault: formula() with long variable names (PR#3680)
...ot;x",50000),collapse=""))) Segmentation fault Sincerely, Jerome Asselin -- Jerome Asselin (Jérôme), Statistical Analyst British Columbia Centre for Excellence in HIV/AIDS St. Paul's Hospital, 608 - 1081 Burrard Street Vancouver, British Columbia, CANADA V6Z 1Y6 Email: jerome@hivnet.ubc.ca Phone: 604 806-9112 Fax: 604 806-9044
2003 Feb 24
2
"trace" argument in legend() (PR#2578)
Full_Name: Jerome Asselin Version: 1.6.2 OS: RedHat Linux 7.2 Submission from: (NULL) (142.103.173.179) Should be an easy fix... Consider the examble below: plot(0,0) legend(0,0,c("Hello!","Hi!"),pch=1:2,lty=1:2,trace=T) It gives the following trace: > plot(0,0) > legend(0,0,c("Hello!","Hi!"),pch=1:2,lty=1:2,trace=T) xchar= 0.05178 ;
2003 Aug 08
1
covmat argument in princomp() (PR#3682)
...-0.4205906 > pc2$center # All NA's (should be the same as pc1$center) [1] NA NA -- Jerome Asselin (Jérôme), Statistical Analyst British Columbia Centre for Excellence in HIV/AIDS St. Paul's Hospital, 608 - 1081 Burrard Street Vancouver, British Columbia, CANADA V6Z 1Y6 Email: jerome@hivnet.ubc.ca Phone: 604 806-9112 Fax: 604 806-9044
2003 Jun 05
2
Fwd: Re: legend() with option adj=1
...cy!! I have never worked with a package where the legend was not automatic. ---------- Forwarded Message ---------- Subject: Re: [R] legend() with option adj=1 Date: Wed, 21 May 2003 09:19:11 +0200 From: Uwe Ligges <ligges at statistik.uni-dortmund.de> To: Jerome Asselin <jerome at hivnet.ubc.ca> Cc: r-help at stat.math.ethz.ch Jerome Asselin wrote: > Hi there, > > I want to justify to right the text of my legend. Consider this short > reproducable example. > > x <- 1:5 > y1 <- 1/x > y2 <- 2/x > plot(rep(x,2),c(y1,y2),type="n",xlab=&...
2003 Jul 15
2
"na.action" parameter in princomp() (PR#3481)
Full_Name: Jerome Asselin Version: 1.7.1 OS: Red Hat Linux 7.2 Submission from: (NULL) (24.77.125.119) Setting the parameter na.action=na.omit should remove incomplete records in princomp. However this does not seem to work as expected. See example below. Sincerely, Jerome Asselin data(USArrests) princomp(USArrests, cor = TRUE) #THIS WORKS USArrests[1,3] <- NA princomp(USArrests, cor =
2003 Oct 24
2
Segmentation fault in .Call() (PR#4761)
Full_Name: Jerome Asselin Version: 1.8.0 OS: RedHat Linux 7.2 Submission from: (NULL) (142.103.177.13) I would not expect a segmentation fault; perhaps an error message. > .Call("log") Segmentation fault This is always reproducable for me. Sincerely, Jerome Asselin
2002 Jul 23
2
sub() and gsub() (PR#1826)
Full_Name: Jerome Asselin Version: 1.5.1 OS: linux redhat 7.2 Submission from: (NULL) (142.103.173.179) gsub() return different answers depending on how the input variables were created. Here is an example of code that replicates the problem. The vectors y and yy appear to be the same, but gsub() doesn't return the same answer. It should remove all the blanks when I use the vector y, but it
2003 Aug 30
3
fisher.test() gives wrong confidence interval (PR#4019)
...se(15-9,13-n11)*theta^n11) #[1] 0.5608724 0.3891316 0.0499960 Sincerely, Jerome Asselin -- Jerome Asselin (Jérôme), Statistical Analyst British Columbia Centre for Excellence in HIV/AIDS St. Paul's Hospital, 608 - 1081 Burrard Street Vancouver, British Columbia, CANADA V6Z 1Y6 Email: jerome@hivnet.ubc.ca Phone: 604 806-9112 Fax: 604 806-9044
2003 Aug 07
2
model.frame() call from inside a function (PR#3671)
...more problems in other cases. Perhaps there is a better fix. Sincerely, Jerome Asselin -- Jerome Asselin (Jérôme), Statistical Analyst British Columbia Centre for Excellence in HIV/AIDS St. Paul's Hospital, 608 - 1081 Burrard Street Vancouver, British Columbia, CANADA V6Z 1Y6 Email: jerome@hivnet.ubc.ca Phone: 604 806-9112 Fax: 604 806-9044
2000 Jan 06
0
anoncvs for R should work again
...stant Professor of Biostatistics Biostatistics/Univ. of Washington (Th) Box 357232 206-543-1044 (3286=fax) Center for AIDS Research/HMC/UW (M/F) Box 359931 206-731-3647 (3693=fax) VTN/SCHARP/FHCRC (Tu/W) Box 358080 206-667-7025 (4812=fax) rossini@(biostat.washington.edu|u.washington.edu|hivnet.fhcrc.org) http://www.biostat.washington.edu/~rossini -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "bod...
2003 Feb 15
2
(no subject)
Hi, Are there some packages which can generate multi-normal, multi-t, etc multivariate sampling? thanks! Best wishes, Peng ******************************* Peng Zhang Department of Biostatistics Harvard School of Public Health 655 Huntington Avenue Boston, Massachusetts 02115 ******************************* I believe I can fly I believe I can touch the sky
2003 Feb 19
1
How to use Cox PH model to select genes from DNA gene expression profiles?
I'm doing prediction of the survival cases using gene expression profiles(Affymetrix chips). Can somebody tell me how to use the Cox PH model to select genes and make a prediction of survival? Thanks. Guangchun
2003 Feb 27
2
epoch time conversion in R
I have a data file where each entry is indexed by the time in seconds since epoch (e.g. 1046315697). Is there an easy way to convert this time value into a more friendly time (such as Month-Year) when plotting it? I searched through the manual, mailing lists, and functions like as.POSIXct and strptime, but didn't find what I need. Thanks, Sharad.
2003 Apr 17
1
bit set or bit test
Hello, does R have functions for setting and testing bit values? I want to conserve memory for storing presence/absence data for large multiple arrays within a single array, using element values like present[x,y] <- ntharray[x,y]*(2^n) where presence is 1, non-presence is 0 and n is the nth array e.g. 1*(2^0) + 0*(2^1) + 0*(2^2) + 1*(2^3) + 0(2^4) for storing the value 9 for presence in
2003 May 20
1
legend() with option adj=1
...results. Is this a bug or is there an easy way that I'm missing? Thanks, Jerome -- Jerome Asselin (J?r?me), Statistical Analyst British Columbia Centre for Excellence in HIV/AIDS St. Paul's Hospital, 608 - 1081 Burrard Street Vancouver, British Columbia, CANADA V6Z 1Y6 Email: jerome at hivnet.ubc.ca Phone: 604 806-9112 Fax: 604 806-9044
2000 Jan 06
0
anoncvs for R should work again
...stant Professor of Biostatistics Biostatistics/Univ. of Washington (Th) Box 357232 206-543-1044 (3286=fax) Center for AIDS Research/HMC/UW (M/F) Box 359931 206-731-3647 (3693=fax) VTN/SCHARP/FHCRC (Tu/W) Box 358080 206-667-7025 (4812=fax) rossini@(biostat.washington.edu|u.washington.edu|hivnet.fhcrc.org) http://www.biostat.washington.edu/~rossini -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "bod...
2002 Nov 22
1
Segmentation fault using "survival" package (PR#2320)
Full_Name: Jerome Asselin Version: 1.6.1 OS: RedHat Linux 7.2 Submission from: (NULL) (142.103.173.179) Hello, I get a segmentation fault when I run the following code. I wouldn't expect meaningful results because my response variable contains only missing values. However, I would expect something like a regular error (not a segmentation fault). library(survival) data <-
2003 Jan 24
1
table() with option "exclude=NULL" (PR#2491)
Full_Name: Jerome Asselin Version: 1.6.2 OS: redhat linux 7.2 Submission from: (NULL) (142.103.173.179) Bug or feature? Hard to say... But it sure would be nice if table() would label the frequency of NA's as it does for NaN's. Regards, Jerome > table(c(2,NA,1,1,1),exclude=NULL) 1 2 3 1 1 > table(c(2,NA,1,1,1,NaN),exclude=NULL) 1 2 NaN 3 1 1 1 #For sake of
2003 Mar 12
1
plot() with type="s" and lty=2 (PR#2630)
Full_Name: Jerome Asselin Version: 1.6.2 OS: RedHat Linux 7.2 Submission from: (NULL) (142.103.173.179) In the following example, the line type lty=2 does not show properly across the entire line. x <- c(seq(0,.5,.001),seq(.6,1,.1)) y <- rep(1,length(x)) plot(x,y,type="s",lty=2) Sincerely, Jerome Asselin
2000 Jan 27
2
nlminb replacement/solution?
...stant Professor of Biostatistics Biostatistics/Univ. of Washington (Th) Box 357232 206-543-1044 (3286=fax) Center for AIDS Research/HMC/UW (M/F) Box 359931 206-731-3647 (3693=fax) VTN/SCHARP/FHCRC (Tu/W) Box 358080 206-667-7025 (4812=fax) rossini@(biostat.washington.edu|u.washington.edu|hivnet.fhcrc.org) http://www.biostat.washington.edu/~rossini -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body...