search for: hinxton

...n between rows instead ? Or is there an appropriate package or function that is more appropriate I'd like to calculate spearman & pearson correlations between rows. Many thanks Jason -- -------------------------------- Jason Skelton Pathogen Microarrays Wellcome Trust Sanger Institute Hinxton Cambridge CB10 1SA Tel +44(0)1223 834244 Ext 7123 Fax +44(0)1223 494919

.....), substitute ) > f3( 2+7, "foo", 3+5 ) Error in lapply(list(...), substitute) : '...' used in an incorrect context Does anybody has a good hint for me as how to do it correctly? Thanks Simon +--- | Dr. Simon Anders, Dipl. Phys. | European Bioinformatics Institute, Hinxton, Cambridgeshire, UK | preferred (permanent) e-mail: sanders at fs.tum.de

..._64 (64-bit) locale: [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base Regards, Pär Engström Postdoctoral Fellow EMBL European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambridge, UK [[alternative HTML version deleted]]

...ata; UNPROTECT(1); return result; } This function always has something to return and it works, but not really elegantly and returning wrong data when fails. Thanks in advance for any comments. Regards Oleg -- Dr Oleg Sklyar European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SD England phone/fax +44(0)1223 49 4478/4468 e-mail osklyar@ebi.ac.uk

...ted. If however I use 'R CMD BATCH myScript --args myDataFile' then R understands --args as an output file and generates a file with that name. Does anyone has a solution for the problem? Best regards Oleg -- Dr Oleg Sklyar European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SD England phone/fax +44(0)1223 49 4478/4468 e-mail osklyar at ebi.ac.uk

...base other attached packages: [1] cgh_1.0-2 loaded via a namespace (and not attached): [1] rcompgen_0.1-17 Thank you very much for your help, Best wishes celine ************************************** Celine Carret, PhD Pathogen Microarrays Wellcome Trust Sanger Institute Hinxton, Cambridge CB10 1SA, UK tel.+44-1223494940 fax.+44-1223494919 ************************************** -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 274...

...clocal.m4 config.status doc m4 tests COPYRIGHTS Makeconf.in Makefrag.f77 THANKS afm configure etc modules tools thanks J. -------------------------------- Jason Skelton Pathogen Microarrays Wellcome Trust Sanger Institute Hinxton Cambridge CB10 1SA Tel +44(0)1223 834244 Ext 7123 Fax +44(0)1223 494919

...yasdendro, hclustfun=hclust) but this returns row dendrogram ordering gave index of wrong length which has come from the viseversa example above. thanks for any help and guidance Jason -- -------------------------------- Jason Skelton Pathogen Microarrays Wellcome Trust Sanger Institute Hinxton Cambridge CB10 1SA Tel +44(0)1223 834244 Ext 7123 Fax +44(0)1223 494919

...isn't what I'm trying to do unless my data is evenly distributed i.e -60 to +60 I can't plot exactly how I want to If anyone has any ideas that would be fantastic Cheers Jason -- -------------------------------- Jason Skelton Pathogen Microarrays Wellcome Trust Sanger Institute Hinxton Cambridge CB10 1SA Tel +44(0)1223 834244 Ext 7123 Fax +44(0)1223 494919

Dear R users & developers, Seth Falcon and Martin Morgan are teaching Advanced R Programming and Bioconductor 30 March - 1 April 2007 at the Wellcome Trust Genome Campus, Hinxton, Cambridge, UK. This two-day course focuses on programming skills required to develop software for statistical analysis of high-throughput genomic data using R and Bioconductor. Lectures and practical sessions introduce the diversity of packages already available for analysis of data, and present...

...ot; and in the latter case, what can be done to display effects of the terms in a "combined" way, such that the contribution of both them on their own and as part of an interaction term is taken into account. Many thanks Mikhail -- Mikhail Spivakov, PhD European Bioinformatics Institute Hinxton Cambridgeshire CB10 1SD UK spivakov at ebi.ac.uk -- View this message in context: http://www.nabble.com/allEffects%28%29-with-lm-tp23837461p23837461.html Sent from the R help mailing list archive at Nabble.com.

...-0.67320085 -0.73464239 -0.03193329 -0.03025987 0.01552101 -0.02808728 [4,] 0.41733259 0.86385119 0.72718191 0.10995336 -0.03082935 0.02770219 0.08069126 Many thanks Mikhail -- Mikhail Spivakov PhD Postdoctoral Fellow European Bioinformatics Institute European Molecular Biology Laboratory Hinxton Cambridgeshire CB10 1SD UK tel +44 1223 492 260 fax +44 1223 494 468 spivakov ebi ac uk -- View this message in context: http://www.nabble.com/fastICA-tp18506527p18506527.html Sent from the R help mailing list archive at Nabble.com.

...n - if there were only one argument in '...', say '1:10', then length(...) would return 10 and one could access elements by ...[[i]], but all this fails if there are two arguments or more). Thanks Oleg -- Dr Oleg Sklyar European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD United Kingdom tel +44 1223 492537 fax +44 1223 494468 email osklyar@ebi.ac.uk [[alternative HTML version deleted]]

...o the element to simlify coding SEXP element = VECTOR_ELT(result, i); // writing some values to the element // converting element into a matrix setAttrib(element, R_DimSymbol, imgSize); Thanks in advance for help Oleg Dr Oleg Sklyar European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SD England phone/fax +44(0)1223 49 4478/4468 e-mail osklyar@ebi.ac.uk

...", i+1, name, 33 CHAR(STRING_ELT(CAR(args), 0))); 34 break; 35 default: 36 Rprintf("[%d] '%s' R type\n", i+1, name); 37 } 38 } 39 return(R_NilValue); 40 } 41 Best regards Simon Anders +--- | Dr. Simon Anders, Dipl. Phys. | European Bioinformatics Institute, Hinxton, Cambridgeshire, UK | office phone +44-1223-494478, mobile phone +44-7505-841692 | preferred (permanent) e-mail: sanders at fs.tum.de

Hello Please find bug report attached. Thanks Matthew -- Matthew Gillman Team 105: Variation Informatics Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK Tel: 01223 834244 Ext. 4922 -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, Lo...

...l should compile without it as well. This leaves me confused. Should the code in the manual really compile without setting any compiler options? If so, what obvious point am I overlooking? Best regards Simon Anders +--- | Dr. Simon Anders, Dipl. Phys. | European Bioinformatics Institute, Hinxton, Cambridgeshire, UK | office phone +44-1223-494478, mobile phone +44-7505-841692 | preferred (permanent) e-mail: sanders at fs.tum.de

...t;A" [3,] "B" "C" "C" "C" where each letter would have a specific color assigned to it. Thank you in advance, Filipe -- Filipe Tavares Cadete PhD Student - Nick Luscombe Group EMBL - European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD UK

...my question is: I'm sure someone has successfully compiled R on X86 Linux using the Intel compilers before - what options did you use to make it work? And how long should this check phase take? Many thanks... Tim -- Dr Tim Cutts Informatics Systems Group Wellcome Trust Sanger Institute Hinxton, Cambridge, CB10 1SA, UK

...at locates the R executable in the path. If this is so, this seems to be a bug to me: An application (let alone a shared library) should not rely on the names of symlinks in the user's search path. Best regards Simon +--- | Dr. Simon Anders, Dipl. Phys. | European Bioinformatics Institute, Hinxton, Cambridgeshire, UK | office phone +44-1223-492680, mobile phone +44-7505-841692 | preferred (permanent) e-mail: sanders at fs.tum.de