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I am running R CMD check on my package nleqslv with R-3.0.0 beta (2013-03-33 r62364) on Mac OS X 10.6.8 In contrast with R-2.15.3 R CMD check now issues a note for - Mercurial version control files .hgignore, .hgtags and directory .hg. These are however included in .hidden_file_exclusions. - typical Mac Finder files .DS_Store All of these are ignored when executing R CMD check --as-cran. I can't remove the .hg* files and directories. I could remove the .DS_Store files to avoid the note. The note is harmless but annoying and strikes me as slightly overzealous. Berend