search for: hgu95av2locusid

...or computational biology and bioinformatics" by Robert C Gentleman et al., 2004. Generating Heatmaps till Fig2 is working so I think esetSel is not the problem.. However, for generating the Figure 3, for GO annotations the following command is not working: > ll <- mget(geneNames(esetSel),hgu95av2LOCUSID)    #it is displaying error messages  Error in mget(geneNames(esetSel), hgu95av2LOCUSID) : object 'hgu95av2LOCUSID' not foundand also geneNames not found try featureNames instead Hence I cant proceed to the next set of commands provided in the paper which are as follows: > ll <- uniqu...

...if there is any suggestions in how to get around this cbind error. I created two character lists with identical length. First tried combine the lists together with cbind, then convert the lists to matrix, and tried again. Both faied. Any fix to merge the two lists/matrices? ll<- multiget(ftID, hgu95av2LOCUSID) > class(ll) [1] "list" > sym <- multiget(ftID, hgu95av2SYMBOL) > class(sym) [1] "list" > cbind(sym, ll) Error in cbind(...) : cannot create a matrix from these types > sym <- as.matrix(multiget(ftID, hgu95av2SYMBOL)) > ll<- as.matrix(multiget(ftID, hg...

I am running R 2.0.0, GOstats 1.1.1 and GO 1.7.0, and when I use the function GOHyperG, I have the following error: w1<-as.list(hgu95av2LOCUSID) w2<-unique(unlist(w1)) set.seed(123) myLL<-sample(w2,100) xx <- GOHyperG(myLL) Error in mget(x, env = GOTERM, ifnotfound = NA) : recursive default argument reference In fact first I tried this function with my locusId ' list (with affymetrix hgu133plus2), but I had the same error...

Hello, I am trying to call R from Perl running on Windows 2000. I have looked through the previous posts regarding running R from Perl and all have referred to the RSPerl package at Omegahat. Unfortunately the documentation for this package specifically states that it only works in Unix at the moment. Does anyone else have any suggestions about the best way to do this in the Windows