search for: hgu133plus2cdf

...be anybody could help the guy and I will deliver the message over our forum to him. If this way is allowed ... Regards Knut Here the question: Hello, I have installed R on a linux machine. I have then installed the biocLite.R package from bioconductor. I wanted to install a few other packages - hgu133plus2cdf, rma . I downloaded the source files and installed in the directory /usr/lib64/R/library but when i try using those files, they show as not installed. Anybody encounter this problem before OR is there something else i am doing wrong? Following is the sequence of stpes i used first: 1) library(...

...file 'nvNormalize/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'nvNormalize' version '1.0' * checking package name space information ... OK * checking package dependencies ... ERROR Namespace dependencies not required: affy affyio hgu133acdf hgu133plus2cdf simpleaffy See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. I've looked at the manual but cannot figure out if the problem is in the way I have specified dependencies in NAMESPACE or DESCRIPTION. It appears th...

...g some problems with memory allocation. I know it is an old issue, I'm sorry. I looked for a solution in the FAQs and manuals, mails, but without finding the working answer. I really hope you can help me. For instance, if I try to read micorarray data I get: > mab=ReadAffy(cdfname="hgu133plus2cdf") Error: cannot allocate vector of size 858.0 Mb > I get similar errors with smaller objects, smaller data sets or other procedures ("Error: cannot allocate vector of size 123.0 Mb"). I'm running R with Suse 11.1 Linux OS, on two Xeon processors (8 cores), 32 GB RAM. I supp...