search for: hgu133aprob

Hello, Im trying to combine 3 affybatches (1x hgu133+2 array and 2x hgu133a array) Im useing this script: library(matchprobes) library(affy) library(AnnotationDbi) library(hgu133plus2probe) library(hgu133aprobe) library(hgu133a.db) u133p2 = ReadAffy() # reading hgu133 +2 cel file into affybatch u133a1 = ReadAffy() # reading hgu133a cel file into affybatch u133a2 = ReadAffy() # reading hgu133a cel file into affybatch data<-combineAffyBatch(list(u133p2,u133a1,u133a2),c("hgu133plus2probe",&qu...

...ct'. > library(hgu133atagprobe) Loading required package: AnnotationDbi > energy.file <- system.file("exampleData", "pdnn-energy-parameter_hg-u133a.txt", package = "affypdnn") > params.chiptype <- pdnn.params.chiptype(energy.file, probes.pack = "hgu133aprobe") Calculating chip type specific parameters, (may take some time)... | | |Error in object$call : $ operator not defined for this S4 class > After this, I also tried to do it for hgu95av2 array as described in the package manual- > library(affypdnn) Loading required...

Hi, I was installing hundreds of packages on a machine with a single call to install.packages() and after a long time the call to install.packages() finally returned with the following warnings and errors: Warning messages: 1: packages ?hgu133aprobe?, ?hgu95av2.db?, ?BSgenome.Celegans.UCSC.ce2?, ?BSgenome.Mmusculus.UCSC.mm10?, ?BSgenome.Dmelanogaster.UCSC.dm3.masked?, ?BSgenome.Hsapiens.UCSC.hg18.masked?, ?BSgenome.Hsapiens.UCSC.hg19.masked?, ?BSgenome.Mmusculus.UCSC.mm9.masked?, ?BSgenome.Scerevisiae.UCSC.sacCer2?, ?BSgenome.Hsapiens.N...

I have recently upgraded to Ubuntu Gutsy and, for the first time, am using a 64-bit installation. After failing miserably to install R from source, not a problem for me in the past with a 32-bit install, I went the route of using the Debian Etch build. This went smoothly, but I am unable to update my numerous R and BioConductor packages, getting non-zero exit status errors on each package. Is