Displaying 4 results from an estimated 4 matches for "hgu133apfam".
2015 Jan 26
2
Inspect a "delayed" assigned whose value throws an error?
...o", stop("Hey!"), assign.env = e)
> substitute(foo, e)
>
> delayedAssign("foo", stop("Hey!"))
> substitute(foo)
Hmm... interesting and odd.
Unfortunately, this doesn't seem to help for reaching into the
namespace of hgu133a.db and inspecting 'hgu133aPFAM', e.g.
> library("hgu133a.db")
> substitute(hgu133aPFAM, env=ns)
Error: hgu133aPFAM is defunct. Please use select() if you need access to PFAM
or PROSITE accessions.
> evalq(substitute(hgu133aPFAM), envir=ns)
Error: hgu133aPFAM is defunct. Please use select() if you need...
2015 Jan 26
2
Inspect a "delayed" assigned whose value throws an error?
...te.
For this I use is.function() and inherits() to inspect each object.
An aroma.affymetrix user reported on a problem that boiled down to the
following:
# source("http://bioconductor.org/biocLite.R"); biocLite("hgu133a.db")
> library("hgu133a.db")
> is.function(hgu133aPFAM)
Error: hgu133aPFAM is defunct. Please use select() if you need access to PFAM
or PROSITE accessions.
> .Internal(inspect(hgu133aPFAM))
> traceback()
3: stop(paste(msg, collapse = ""), call. = FALSE, domain = NA)
2: .Defunct(msg = msg)
1: (function ()
{
if (grepl("...
2015 Jan 27
0
Inspect a "delayed" assigned whose value throws an error?
...; substitute(foo, e)
>>
>> delayedAssign("foo", stop("Hey!"))
>> substitute(foo)
> Hmm... interesting and odd.
> Unfortunately, this doesn't seem to help for reaching into the
> namespace of hgu133a.db and inspecting 'hgu133aPFAM', e.g.
>> library("hgu133a.db")
>> substitute(hgu133aPFAM, env=ns)
> Error: hgu133aPFAM is defunct. Please use select() if you need access to PFAM
> or PROSITE accessions.
>> evalq(substitute(hgu133aPFAM), envir=ns)
> Error: hgu133...
2015 Jan 26
0
Inspect a "delayed" assigned whose value throws an error?
...ion() and inherits() to inspect each object.
> An aroma.affymetrix user reported on a problem that boiled down to the
> following:
>
> # source("http://bioconductor.org/biocLite.R"); biocLite("hgu133a.db")
>> library("hgu133a.db")
>> is.function(hgu133aPFAM)
> Error: hgu133aPFAM is defunct. Please use select() if you need access to PFAM
> or PROSITE accessions.
>> .Internal(inspect(hgu133aPFAM))
>
>> traceback()
> 3: stop(paste(msg, collapse = ""), call. = FALSE, domain = NA)
> 2: .Defunct(msg = msg)
> 1: (fun...