Displaying 1 result from an estimated 1 matches for "hgnc_symbol".
2013 Feb 08
1
Conflict command getSequence {biomaRt} and getSequence {seqinr} !!
Hi !
Facing problem with " getSequence" commend .
when only biomaRt package loaded the following example working well
>mart <- useMart("ensembl",dataset="hsapiens_gene_ensembl")
>seq = getSequence(id="BRCA1", type="hgnc_symbol", seqType="peptide", mart = mart)
show(seq)
but when i have loaded the seqinr, i got problem with same commend .
> mart <- useMart("ensembl",dataset="hsapiens_gene_ensembl")
> seq = getSequence(id="BRCA1", type="hgnc_symbol", seqTy...