search for: hg18

...Data rowNames: LT290677RU_D1_2011-02-16 LT286300LU_D1_2010-07-24 ... LT003990RU_D1_2010-11-04 (59 total) varLabels: sampleID tissue ... Annotation (5 total) varMetadata: labelDescription channel featureData: none experimentData: use 'experimentData(object)' Annotation: pd.feinberg.hg18.me.hx1 $v1.1 TilingFeatureSet (storageMode: lockedEnvironment) assayData: 2197815 features, 17 samples element names: channel1, channel2 protocolData rowNames: LT282562RM_D1_2010-11-22 LT280646RU_D1_2010-11-22 ... LT093297LU_D1_2010-11-12 (17 total) varLabels: filenamesChannel1 filena...

...after a long time the call to install.packages() finally returned with the following warnings and errors: Warning messages: 1: packages ?hgu133aprobe?, ?hgu95av2.db?, ?BSgenome.Celegans.UCSC.ce2?, ?BSgenome.Mmusculus.UCSC.mm10?, ?BSgenome.Dmelanogaster.UCSC.dm3.masked?, ?BSgenome.Hsapiens.UCSC.hg18.masked?, ?BSgenome.Hsapiens.UCSC.hg19.masked?, ?BSgenome.Mmusculus.UCSC.mm9.masked?, ?BSgenome.Scerevisiae.UCSC.sacCer2?, ?BSgenome.Hsapiens.NCBI.GRCh38?, ?BSgenome.Rnorvegicus.UCSC.rn5?, ?drosophila2probe?, ?hgu95av2probe?, ?hgu95av2cdf?, ?SNPlocs.Hsapiens.dbSNP.20100427?, ?SNPlocs.Hsapiens....

I am running a simple SQL SELECT statement that involvs 50k + data points using R and the RJDBC interface. I am facing very slow response times in both the RGUI and the R console. When running this SQL statement directly in a SQL client I have processing times that are a lot lot faster (which means that the SQL statement itself is not the problem). Did any of you compare RJDBC vs RMySQL or is