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heyas
2016 Apr 05
2
Is that an efficient way to find the overlapped , upstream and downstream ranges for a bunch of ranges
I do have a bunch of genes ( nearly ~50000) from the whole genome, which read in genomic ranges
A range(gene) can be seem as an observation has three columns chromosome, start and end, like that
seqnames start end width strand
gene1 chr1 1 5 5 +
gene2 chr1 10 15 6 +
gene3 chr1 12 17 6 +
gene4 chr1 20 25 6 +
gene5