Displaying 1 result from an estimated 1 matches for "heuristic_lp_flex".
2024 May 14
0
flexsurvspline with offset
...)
# obtain the linear predictor for each patient
predf <- model.matrix(fit1) %*% fit1$res[-(1:4),"est"]
# Predict baseline survival at 5 years
y5_Flex_1 <- summary(fit1,type="survival",t=5)
y5_Flex <- y5_Flex_1[[1]]$est
y5_Flex
# Shrinkage factor
vanH <- 0.9589255
heuristic_lp_flex = vanH*predf??????
# Now calculate the shrunken model baseline survival prob at 5 years by fixing the shrunken lp as an offset and predicting the baseline survival
fit1_shrunk <- flexsurvspline(Surv(rfstime,rfs)~offset(heuristic_lp_flex),k=2,data=rotterdam)
The error message is
Error in model....