search for: henr

...try to use relative instead of absolute pathnames. The limitation is deep down in the file system itself and it is the absolute pathname that counts." Admittedly, it's been several years when I last looked into it, but at the time when I wrote that I spent lots of time investigating it. /Henrik > > Cheers, > Simon > > > > > > On May 29, 2019, at 11:49 AM, jing hua zhao <jinghuazhao at hotmail.com> wrote: > > > > Dear R-developers, > > > > I am struggling with packaging with sprintf and snprintf() as the following WARNINGS from gc...

...BLE_JIT and _R_RNG_VERSION_. I always considered R_* variables to be "public" and _R_*_ ones being "internal" but realized I don't have a reference for this. Is this true, or is there another reason? Is the difference between the two kinds documented anywhere? Thank you, Henrik

Another thing to consider if one wants to anonymize the build is the UID/GID of the files in the tarball. So there might be a need for a R_BUILD_UID and R_BUILD_GID, e.g. by setting those to 32767 ("nobody"). /Henrik On Fri, Jan 25, 2019 at 9:25 AM Will L <will.landau at gmail.com> wrote: > > Thanks, Kurt. > > I think I now have enough time to write a patch. What are the steps? I have > read https://www.r-project.org/bugs.html#how-to-submit-patches but I do not > seem to have permissi...

...quot;, "again"), graphics=TRUE) Does it? FYI, I installed R 3.6.3 from source on CentOS 7 a few hours ago, and for me the above works just fine. For your immediate needs of selecting a CRAN mirror, you can set: options(menu.graphics = FALSE) as a workaround to skip Tcl-based menus. /Henrik On Sat, Feb 29, 2020 at 10:01 AM Charles Geyer <charlie at stat.umn.edu> wrote: > > Just built 3.6.3 from source and tcl doesn't work. Worked fine with the > same laptop in 3.6.2. Here's the exact error. > > blurfle$ R --vanilla > > R version 3.6.3 (2020-02-2...

...e")) ans <- NextMethod("[") ## as.character gives a vector. if(length(ans) == 0L || is.null(ans[[1L]]) || as.character(ans[[1L]])[1L] == "~") { class(ans) <- "formula" environment(ans) <- environment(x) } ans } /Henrik

...tps://svn.r-project.org/R/), hence might not even compile on your platform and can contain any number of bugs. They will probably work, but maybe not. Use them to verify whether a bug you're tracking has been fixed or a new feature you always wanted has already been implemented." Thanks, Henrik

...tch({ sexsnp[i] = fisher.test(table(data[,3], data[,i+38]))$p }, error=function(e) print(NA)) Exercise: Compare > list(a = 2) $a [1] 2 with > list({ a = 2 }) [[1]] [1] 2 and > list(b = { a = 2 }) $b [1] 2 BTW, note how the latter two assigned a <- 2 to the global environment. /Henrik On Thu, May 18, 2023 at 8:22?AM Berwin A Turlach <berwin.turlach at gmail.com> wrote: > > G'day Federico, > > On Wed, 17 May 2023 10:42:17 +0000 > "Calboli Federico (LUKE)" <federico.calboli at luke.fi> wrote: > > > sexsnp = rep(NA, 1750) > &g...

Thank you for confirming this. I just filed PR#18650 (https://bugs.r-project.org/show_bug.cgi?id=18650). FWIW, I've found two other issues with startDynamicHelp() prior to this: * https://bugs.r-project.org/show_bug.cgi?id=18645 * https://bugs.r-project.org/show_bug.cgi?id=18648 /Henrik On Sat, Jan 6, 2024 at 5:53?PM Steve Martin <marberts at protonmail.com> wrote: > > Henrik, > > I was able to reproduce this both with Rscript and interactively using the same version of R you're using (fresh install) and Windows 10.0.22621.2715. It took about a dozen tries...

...ill cause Rgui to process ~/.Renviron, e.g. C:\User\alice> set R_USER=%UserProfile%\Documents C:\User\alice> Rgui The background for finding this is R-help thread '[R] tempdir() does not respect TMPDIR' on 2020-08-29 (https://stat.ethz.ch/pipermail/r-help/2020-August/468573.html). /Henrik

...can be requested using RNGkind() or RNGversion() if necessary for reproduction of old results. Thanks to Duncan Murdoch for contributing the patch and Gabe Becker for further assistance." If so, testing with export _R_RNG_VERSION_=3.5.0 might remove/explain those errors. Just a thought Henrik On Wed, Mar 27, 2019 at 8:16 PM Therneau, Terry M., Ph.D. via R-devel <r-devel at r-project.org> wrote: > > I'm getting ready to submit an update of survival, and is my habit I run the checks on all > packages that depend/import/suggest survival. I am getting some very odd b...

...ORKS` and corresponding R option `enable.forks` that both take logical scalars. By setting `R_ENABLE_FORKS=false` or equivalently `enable.forks=FALSE`, `parallel::mclapply()` will fall back to `lapply()`. For `parallel::mcparallel()`, we could produce an error if forks are disabled. Comments? /Henrik

...ould be doable without major troubles. On MS Windows, this move has already been made. When R 4.2.0 was released, the default R_LIBS_USER location on MS Windows was changed, similarly, to the Local Application Data directory in R (>= 4.2.0), e.g. C:\Users\alice\AppData\Local\R\win-library\4.2. /Henrik On Thu, Mar 16, 2023 at 3:09?PM Dirk Eddelbuettel <edd at debian.org> wrote: > > > On 16 March 2023 at 13:39, Felipe Contreras wrote: > | I see R by default installs packages in ~/R. I know I can change the > | default directory with R_LIBS_USER, but software shouldn't b...

...2] "a" "b" > dim(x) <- dim(x) ## No longer removes "dimnames" > str(dimnames(x)) List of 2 $ : chr "A" $ : chr [1:2] "a" "b" > dim(x) <- rev(dim(x)) ## Still removes "dimnames" > str(dimnames(x)) NULL /Henrik

...RStudio Console - either by you or by some package code that you use directly or indirectly. You could even use stop() here if you wanna be conservative. [0] https://github.com/rstudio/rstudio/issues/2597#issuecomment-482187011 [1] https://stat.ethz.ch/pipermail/r-devel/2020-January/078896.html /Henrik On Tue, Apr 28, 2020 at 2:39 AM Shian Su <su.s at wehi.edu.au> wrote: > > Yes I am running on Rstudio 1.2.5033. I was also running this code without error on Ubuntu in Rstudio. Checking again on the terminal and it does indeed work fine even with large data.frames. > > Any idea...

..., e2) .Primitive("+") attr(,"class") [1] "plus" # Hmm... > str(base::`+`) function (e1, e2) - attr(*, "class")= chr "plus" Looks to be the case for common (all?) .Primitive functions. Is this expected? Should I report this one to BugZilla? /Henrik

...is it stability, is it that the current API is under construction, is it a worry about maintenance load for R Core, ...? Do we know why? It sounds like it's a feature that is useful. I think we missed out on some great enhancements in the past because of it not being part of the public API. /Henrik On Wed, May 6, 2020, 16:26 Martin Morgan <mtmorgan.bioc at gmail.com> wrote: > yep, you're right, after some initial clean-up and running with or without > --as-cran R CMD check gives a NOTE > > * checking compiled code > File ?socketeer/libs/socketeer.so?: >...

ISSUE: On MS Windows, running cmd.exe, calling Rscript --vanilla -e "port <- tools::startDynamicHelp(); port; port <- tools::startDynamicHelp(FALSE); port" will sometimes stall R at the end, preventing it from existing. This also happens when running R in interactive mode. It seems to stem from calling tools::startDynamicHelp(FALSE). Before filing a formal bug report, can

This is very exciting news. Luke, thank you for all your work on this - I know it's been a long journey. All the best, Henrik On Tue, Dec 3, 2019 at 8:04 AM Tierney, Luke <luke-tierney at uiowa.edu> wrote: > > R-devel has been switched to use reference counting by default with > r77508. Building with -DSWITCH_TO_NAMED goes back to the NAMED > mechanism. > > Best, > > luke > > On Sun,...

...Before deciding on making force=FALSE the new default, I think it would be valuable to play the devil's advocate and explore and identify all possible downsides of such a default, e.g. breaking existing instructions, downstream package code that uses install.packages() internally, and so on. /Henrik PS. Although the idea of having update.packages() install missing packages is not bad, I don't think I'm a not a fan for the sole purpose of risking installation instructions starting using update.packages() instead, which will certainly confuse those who don't know the history (thin...

...t, set.seed() always return NULL. BTW, and my memory might be bad, I think I mentioned this in the past but was told that you cannot reset the RNG state for all types of RNG kinds. That might complicate things, but on the other hand, that could be checked for at run-time by the above functions. /Henrik On Wed, Oct 30, 2019 at 9:50 AM Henrik Bengtsson <henrik.bengtsson at gmail.com> wrote: > > > On 30/10/2019 9:08 a.m., peter dalgaard wrote: > > > You can fairly easily work around that by saving and restoring .Random.seed. > > This is actually quite tedious to get...