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harvard
2003 Dec 22
2
Memory allocation
...R
In the shortcut for invoking R I have set --max-mem-size=1024M, so that I
get
> memory.limit()
[1] 1073741824
Below is an example of what keeps happening as I am working. Any suggestions
as to how I can stop running out of mermory?
> memory.size()
[1] 502904736
> log2.harvAD <- log2.harvAD[log2.harvAD$Probesets %in%
harvard.genes$probeset,]
Error: cannot allocate vector of size 49 Kb
> log2.harvAD <- log2.harvAD[,c(1,1+order(names(log2.harvAD)[-1]))]
Error: cannot allocate vector of size 49 Kb
> log2.harvAD.annot <- unlist(lapply(strsplit(names(log2.harv...