search for: h5open

..."$with_hdf5"; then HDF5LDFLAGS=-L${with_hdf5}/lib HDF5CPPFLAGS=-I${with_hdf5}/include fi LIBS=-lm CPPFLAGS="$ZLIBCPPFLAGS $HDF5CPPFLAGS $CPPFLAGS" LDFLAGS="$HDF5LDFLAGS $ZLIBLDFLAGS $LDFLAGS" AC_SEARCH_LIBS(inflate, z, have_zlib=yes, have_zlib=no) AC_SEARCH_LIBS(H5open, hdf5, have_hdf5=yes, have_hdf5=no) if test $have_zlib = no; then AC_MSG_ERROR(Can't find zlib) fi if test "$have_hdf5" = yes; then AC_MSG_CHECKING(for sufficiently new HDF5) AC_TRY_LINK([#include <hdf5.h>], [ H5T_pers_t convtype = H5T_PERS_SOFT; H5Tclose ((hid...

...works... yes checking whether we are cross compiling... no checking for executable suffix... checking for object suffix... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for library containing inflate... -lz checking for library containing H5open... no configure: error: Can't find HDF5 Thanks. Jahrul -- Jahrul Alam, PhD Post-doctoral researcher Dept of Earth and Environmental Sciences University of Waterloo Waterloo, ON, Canada http://www.math.mcmaster.ca/~alamj/ [[alternative HTML version deleted]]

...works... yes checking whether we are cross compiling... no checking for executable suffix... checking for object suffix... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for library containing inflate... -lz checking for library containing H5open... no configure: error: Can't find HDF5 ERROR: configuration failed for package `hdf5' But how to I tell the install procedure where to look for my hdf libraries? Changing to the hdf5 package directory I can do a configure and understand that I need to give it the flag --with-hdf5=/path/t...

...for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for library containing inflate... -lz checking for library containing H5open... -lhdf5 checking for sufficiently new HDF5... yes configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -std=gnu99 -I/share/apps/R-core-2.12.1_SHLIB/lib64/R/include -I/share/apps/HDF5/include -I/usr/local/include -fpic -g -O2 -c hdf5.c -o hdf5.o gcc -std=gnu99...

...or suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for library containing inflate... -lz checking for library containing H5open... no configure: error: Can't find HDF5 ERROR: configuration failed for package ?hdf5? * removing ?/home/uday/R/x86_64-pc-linux-gnu-library/2.14/hdf5? Warning in install.packages : installation of package ?hdf5? had non-zero exit status The downloaded packages are in ?/tmp/Rtmp7Ot3Yl/downlo...