Displaying 2 results from an estimated 2 matches for "gsm907854_inr".
2018 May 03
0
download.file does not process gz files correctly (truncates them?)
...destfile = fname)
The file xxx_direct.CEL.gz is downloaded from
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM907854 (download link
at the bottom of the page).
Output of dir in CMD:
05/03/2018 11:02 AM 4,529,547 GSM907854_direct.CEL.gz
05/03/2018 11:17 AM 4,537,668 GSM907854_inR.CEL.gz
or from R :
> diff(file.size(dir())) # contains both CEL files.
[1] 8121
Strangely enough I get the following message from download.file() :
Content type 'application/octet-stream' length 4529547 bytes (4.3 MB)
downloaded 4.3 MB
So the reported length is exactly the same as i...
2018 May 02
7
download.file does not process gz files correctly (truncates them?)
Dear all,
I've noticed by trying to download gz files from here :
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM907811
At the bottom one can download GSM907811.CEL.gz . If I download this
manually and try
oligo::read.celfiles("GSM907811.CEL.gz")
everything works fine. (oligo is a bioConductor package)
However, if I download using
download.file("