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2008 May 06
1
Significance analysis of Microarrays (SAM)
...a using the {samr} package. I have a matrix containing my data which has 17816 rows corresponding to genes, and 286 columns corresponding to samples. The name of this matrix is data.matrix2. Some of the first values of this matrix are: data.matrix2[1:3,1:5] GSM36777 GSM36778 GSM36779 GSM36780 GSM36781 [1,] 1.009274 1.0740659 1.048540 1.015946 1.022650 [2,] 1.007992 0.8768410 0.962442 1.111742 1.121150 [3,] 0.981853 0.9606492 1.024987 1.053302 1.063408 I also have the time in which each patient-sample is examined for relapse. This information is in vector y, which has length 286, and is declare...