search for: gsload

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2003 Dec 26
1
Problems converting output from Sweave to PDf
...eSpring} \maketitle \copyright{2003 Silicon Genetics} \section{Introduction} This package contains a number of functions to facilitate the integration of R code into the Gene Expression analysis program GeneSpring, by Silicon Genetics. Available functions include: \begin{itemize} \item \texttt{GSload.int()} - Read GeneSpring experiment interpretation from file and return a GeneSpring gene expression object (GSint) \item \texttt{GSload.intBC()} - Read GeneSpring experiment interpretation from file and return a BioConductor gene expressioon object (exprSet) \item \texttt{GSload.exp()} - Read Gene...
2004 Oct 21
0
Limma B-statistics
Hi, I need some help with the interpretation of B statistics generated by eBayes in the limma package. I want to compare gene expression in three groups of Affy samples. The expression set has been imported from GeneSpring using GSload.expBC and a linear model fitted to the data using a design based on the three groups (6, 5, and 5 samples in each group, respectively). I have then made 3 contrasts to cover all possible comparisons within the data set, and generated empirical Bayes statistics using eBayes. I've then used...