Displaying 4 results from an estimated 4 matches for "gsea".
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gse
2012 Nov 28
1
GSEA package error
...the error:
/Error in `[.data.frame`(fixed.gs.data, , (csum.group[i-1] +
1):csum.group[i]) :
Undefined colums selected/
If you could give me some ideas on how to have it working that would be
extremely useful!
Seb
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2015 May 14
2
Creating a vignette which depends on a non-distributable file
...which the user can easily download manually. Moreover, it
is not possible to download this file automatically from R: downloading
requires a (free) registration that seems to work only through a browser.
(I'm talking here about the MSigDB from the Broad Institute,
http://www.broadinstitute.org/gsea/msigdb/index.jsp).
In the vignette, I tell the user to download the file and then show how it
can be parsed and used in R. Thus, I can compile the vignette only if this
file is present in the vignettes/ directory of the package. However, it
would then get included in the package -- which I am not...
2015 May 14
1
Creating a vignette which depends on a non-distributable file
...manually. Moreover, it
>> is not possible to download this file automatically from R: downloading
>> requires a (free) registration that seems to work only through a browser.
>> (I'm talking here about the MSigDB from the Broad Institute,
>> http://www.broadinstitute.org/gsea/msigdb/index.jsp).
>>
>> In the vignette, I tell the user to download the file and then show how it
>> can be parsed and used in R. Thus, I can compile the vignette only if this
>> file is present in the vignettes/ directory of the package. However, it
>> would then ge...
2015 May 14
0
Creating a vignette which depends on a non-distributable file
...easily download manually. Moreover, it
> is not possible to download this file automatically from R: downloading
> requires a (free) registration that seems to work only through a browser.
> (I'm talking here about the MSigDB from the Broad Institute,
> http://www.broadinstitute.org/gsea/msigdb/index.jsp).
>
> In the vignette, I tell the user to download the file and then show how it
> can be parsed and used in R. Thus, I can compile the vignette only if this
> file is present in the vignettes/ directory of the package. However, it
> would then get included in the pa...