search for: gsdeflist

...x (named /data_final/) with 11k rows(genes) and 60 cols (58 samples (29N vs 29T), GO IDs, KEGG IDs). I also have a separate vector GS with the GO IDs mapped to genes (no duplicate genes but multiple IDs per gene like in col 59) However when I try to run: /singleDC(data_final, group=c(1:29,30,58), GSdefList = GS, nperm = 3, permDI=TRUE)/ I get an error/ ?unused argument(s) (permDI=TRUE)?/ When I run it without that argument it runs indefinitely even if I use only 100 rows data_final[1:100,]. Furthermore when I block the computation I get the error: /Error in `[.data.frame`(fixed.gs.data, , (csum.g...