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granbase
2011 Jun 10
3
CRAN package with dependencies on Bioconductor
...y MacOS):
source("http://www.bioconductor.org/biocLite.R")
biocLite("graph")
install.packages("gMCP")
This results in errors like the following:
> BonferroniHolmGraph(2)
Error in validObject(.Object) :
invalid class "graphMCP" object: superclass "graphBase" not defined in the
environment of the object's class
The superclass graphBase is introduced in graph 1.30. In my understanding
the problem is that our package gMCP is build on CRAN for R 2.12 with the
package graph in version 1.30. Unfortunately biocLite installs
graph_1.28.0.zip for R 2...