Displaying 4 results from an estimated 4 matches for "grangeslist".
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rangeslist
2010 Sep 07
1
Dispatch method on S3 or S4 class
...cRanges)
setGeneric("analyse", function(x, y, ...) standardGeneric("analyse"))
setMethodS3("analyse", "AffymetrixCelSet", function(x, y, z, ...)
{
x;
UseMethod("analyse")
}
)
setGeneric("analyse")
setMethod("analyse", "GRangesList", function(x, y, a, b, c)
{
x;
}
)
Thanks,
Dario.
--------------------------------------
Dario Strbenac
Research Assistant
Cancer Epigenetics
Garvan Institute of Medical Research
Darlinghurst NSW 2010
Australia
2011 Feb 02
2
Memory Leak
...PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND
6637 darstr 20 0 30.0g 29g 4712 S 0 63.2 10:34.43 R
and what objects I have loaded in memory :
> lsos()
Type Size PrettySize Rows Columns
A list 552387720 526.8 Mb 2 NA
B GRangesList 552376408 526.8 Mb 4 NA
C SimpleRleList 353421896 337 Mb 24 NA
D GRanges 236410608 225.5 Mb 15272853 NA
E data.frame 6981952 6.7 Mb 24966 14
F data.frame 6782136 6.5 Mb 24966 13
G list 4393704 4.2 Mb 24964...
2010 Oct 14
0
GridR error
...<anonymous>: no visible global function
definition for ?ScanBamParam?\n <anonymous>: no visible global function
definition for ?scanBamFlag?\n <anonymous>: no visible global function
definition for ?matchBamToNames?\n <anonymous>: no visible binding for
global variable ?GRangesList?\n <anonymous>: no visible binding for
global variable ?align2GRanges?\n <anonymous>: no visible binding for
global variable ?GRangesList?\n <anonymous>: no visible binding for
global variable ?align2GRanges?\n <anonymous>: no visible binding for
global variable ?align2G...
2010 Oct 15
0
nomianl response model
...<anonymous>: no visible global function
definition for ?ScanBamParam?\n <anonymous>: no visible global function
definition for ?scanBamFlag?\n <anonymous>: no visible global function
definition for ?matchBamToNames?\n <anonymous>: no visible binding for
global variable ?GRangesList?\n <anonymous>: no visible binding for
global variable ?align2GRanges?\n <anonymous>: no visible binding for
global variable ?GRangesList?\n <anonymous>: no visible binding for
global variable ?align2GRanges?\n <anonymous>: no visible binding for
global variable ?align2G...