Displaying 2 results from an estimated 2 matches for "gohyperg".
2005 May 04
1
error with the function GOHyperG from GOstats package
I am running R 2.0.0, GOstats 1.1.1 and GO 1.7.0,
and when I use the function GOHyperG, I have the following error:
w1<-as.list(hgu95av2LOCUSID)
w2<-unique(unlist(w1))
set.seed(123)
myLL<-sample(w2,100)
xx <- GOHyperG(myLL)
Error in mget(x, env = GOTERM, ifnotfound = NA) :
recursive default argument reference
In fact first I tried this function with my locusId '...
2011 Jun 28
1
help required for GO Annotation problem
...ror in mget(geneNames(esetSel), hgu95av2LOCUSID) : object 'hgu95av2LOCUSID' not foundand also geneNames not found try featureNames instead
Hence I cant proceed to the next set of commands provided in the paper which are as follows:
> ll <- unique(unlist(ll))> mf <- as.data.frame(GOHyperG(ll))[, 1:3]> mf <- mf[mf$pvalue < 0.01, ]
sincerelySumanCCMB Hyderabad.
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