search for: giraph

...asures that I want to use, but seems only to operate on binary graphs. I have read work by Mark Newman (http://aps.arxiv.org/abs/cond-mat/0407503/), who suggests that a weighted graph can be transformed into an unweighted multigraph, to which such measures can be applied. It seems that the package giRaph contains a function to handle multigraphs, but there is no example in the manual to show how it is used. I am also not sure whether this multigraph structure can be used as input into the relevant functions in the sna package. Can anyone advise? Many thanks, Andrew Wilson

R-devel, I'm interested in looking at some examples of existing R packages that rely heavily on S4 classes to get a feel for varying styles and package organization techniques. Could you recommend any packages that might serve as a good starting point? Thanks in advance, Jeff

R-devel, I'm interested in looking at some examples of existing R packages that rely heavily on S4 classes to get a feel for varying styles and package organization techniques. Could you recommend any packages that might serve as a good starting point? Thanks in advance, Jeff

I'm in the process of converting some S3 methods to S4 methods. I have this function : setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")}) setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) { ... ... ... })

...us","gcmrec","gdata","gee","geepack","genalg","Geneland","GeneNT","genetics","GeneTS","GenKern","geometry","geoR","geoRglm","ggm","ggplot","giRaph","gld","gllm","glmmML","glmpath","glpk","gmodels","gmp","gmt","gnm","GPArotation","gpclib","gplots","gpls","graphics","grasper","GRASS&quot...