search for: gilp

...possibly is defunct and should be removed entirely), but the second one is seen by the user (through a link in ~/.R/doc/html) and is seriously corrupted. Some details are appended. I guess I'll stick with "R INSTALL dse" for now. Paul Gilbert _______ After R make: -rw-r--r-- 1 gilp res 154164 Nov 18 14:17 /home/res/gilp/R/doc/html/function.html -rw-r--r-- 1 gilp res 1179 Nov 18 14:17 /home/res/gilp/R/doc/html/packages.html After R INSTALL -l rlibs dse -rw-r--r-- 1 gilp res 1493 Nov 18 14:25 /home/res/gilp/R/doc/html/function....

Recent sensible changes to the dynload mechanism have made an old problem resurface: how should we deal with packages which contain Fortran code and may need to be linked against additional libraries such as -lf2c? The current consensus is that extra Fortran libraries maybe needed are handled via the make variable FLIBS, and that `-lf2c' or `-lg2c' are added by default if g77 is used.

I'm just trying to install 62.1 under Solaris. Making the program reports no errors, but when I try to run R I get ld.so.1: /home/res8/gilp/R-versions/R-0.62.1/bin/R.binary: fatal: libF77.so.2: can't open file: errno=2 Is there any standard place where I should be looking to find libF77? When make moves on to building the documents I get the errors below. (Is this because configure did not find perl?) Paul Gilbert ... DONE (INS...

I'm having trouble making todays development snapshot: -DHAVE_CONFIG_H -g -O2 -c stirlerr.c -o stirlerr.o stirlerr.c:34: conflicting types for `Rf_stirlerr' ../../src/include/R_ext/Mathlib.h:557: previous declaration of `Rf_stirlerr' make[3]: *** [stirlerr.o] Error 1 [20] /home/mfa5/gilp/R-versions/R-devel : uname -a SunOS mfa99579 5.6 Generic_105181-11 sun4u sparc SUNW,Ultra-5_10 [21] /home/mfa5/gilp/R-versions/R-devel : uname SunOS [22] /home/mfa5/gilp/R-versions/R-devel : uname -r 5.6 More complete details follow. Paul Gilbert _______ [16] /home/mfa5/gilp/R-versions : tar -xf...

...: yes configure: WARNING: you cannot build DVI versions of the R manuals configure: WARNING: you cannot build info or html versions of the R manuals configure: WARNING: you cannot build PDF versions of the R manuals ~/toolchain/R/clusterPGI/R-devel:make make[1]: Entering directory `/home/mfa/gilp/toolchain/R/clusterPGI/R-devel/m4' make[1]: Nothing to be done for `R'. make[1]: Leaving directory `/home/mfa/gilp/toolchain/R/clusterPGI/R-devel/m4' make[1]: Entering directory `/home/mfa/gilp/toolchain/R/clusterPGI/R-devel/tools' make[1]: Nothing to be done for `R'. make[1]:...

...os creating tests/Makefile creating tests/Examples/Makefile creating src/include/Platform.h R is now configured for sparc-sun-solaris2.6 Source directory: . Installation directory: /usr/local C compiler: gcc -g -O2 FORTRAN compiler: g77 -O2 [15] /home/res4/gilp/R : make make: Fatal error: Don't know how to make target `src/*/*.[chfy]' [16] /home/res4/gilp/R : make install make: Fatal error: Don't know how to make target `src/*/*.[chfy]' ... [31] /home/res4/gilp/R-versions/R-0.63 : make -d MAKEFLAGS value: Building all because it is out...

...o dblcen.o hclust.o kmns.o mkdir ../../../../library/mva/libs mkdir ../../../library/stepfun mkdir ../../../library/stepfun/R Building system startup profile You should `make docs' now ... make: Fatal error: Don't know how to make target `*/man/*.Rd' Current working directory /home/res4/gilp/R-versions/R-0.63.2/src/library [17] /home/res/gilp/R-versions/R-0.63.2 : which perl /usr/bin/perl [18] /home/res/gilp/R-versions/R-0.63.2 : perl --version This is perl, version 5.004_04 built for sun4-solaris Copyright 1987-1997, Larry Wall Perl may be copied only under the terms of either the...

With R-rc_2010-10-11_r53297.tar.gz I am getting ... ** building package indices ... ** testing if installed package can be loaded Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/home/mfa/gilp/toolchain/R/src/R-rc/library/cluster/libs/cluster.so': /home/mfa/gilp/toolchain/R/src/R-rc/library/cluster/libs/cluster.so: undefined symbol: cl_daisy_ ERROR: loading failed * removing ?/home/mfa/gilp/toolchain/R/src/R-rc/library/cluster? make[2]: *** [cluster.ts] Error 1 make[2]: Leavin...

I've loaded R-0.50-a1 but when I try to apply the patches it cannot find the files to apply patches to. [9] gilp/R0.50 : patch <R-0.50-a1.patch1 Looks like a new-style context diff. File to patch: [10] gilp/R0.50 : [10] gilp/R0.50 : [10] gilp/R0.50 : cd R-0.50-a1 [11] gilp/R0.50/R-0.50-a1 : ls CHANGES RESOURCES configure.mac* COPYING TASKS configure.win* COPYRIGHTS TASKS.OLD data/ INSTALL V...

...lease 3 (Taroon Update 7) Kernel 2.4.21-40.ELsmp on an x86_64 Below are the messages from MCMCpack. Perhaps my systems are messed up? Paul Gilbert > install.packages("MCMCpack") Warning in install.packages("MCMCpack") : argument 'lib' is missing: using /home/mfa/gilp/toolchain/R/asd05546/R-2.3.1/site-library --- Please select a CRAN mirror for use in this session --- .... Selection: 3 trying URL 'http://cran.at.r-project.org/src/contrib/MCMCpack_0.7-2.tar.gz' Content type 'application/x-tar' length 303618 bytes opened URL ======================...

Just for the fun of it (actually in order to test some Fortran more extensively), I've compiled and installed g77, yesterday on our Solaris 2.5.1 machines. After doing (in R's toplevel directory) make distclean ./configure now chooses g77 (instead of Sun's f77 which was chosen before). I now do make make check cd tests/Examples and carefully compare base-Ex.Rout to an

...am not setting CFLAGS or FFLAGS, but can someone suggest what I should set them to (or is this some other problem)? Also, the reason I am trying gcc 3.2 is to use -m64. Do I need to specify this explicitly or will configure choose that automatically? Thanks, Paul Gilbert _______ [21] /home/com1/gilp/toolchain/R/zot2 : cd R-1.6.1 [22] /home/com1/gilp/toolchain/R/zot2/R-1.6.1 : gcc --version gcc (GCC) 3.2 Copyright (C) 2002 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PA...

...ng Recommended packages: yes configure: WARNING: you cannot build info or html versions of the R manuals However, when I make I get .... pgcc -shared -L/usr/lib64 -o tools.so text.o init.o Rmd5.o md5.o mkdir -p -- ../../../../library/tools/libs make[5]: Leaving directory `/home/mfa/gilp/toolchain/R/mfa04559/R-2.3.0PGI/src/library/tools/src' make[4]: Leaving directory `/home/mfa/gilp/toolchain/R/mfa04559/R-2.3.0PGI/src/library/tools/src' **ERROR: in routine alloca() there is a stack overflow: thread 0, max 10228KB, used 0KB, request 16B make[3]: *** [all] Error 1 make[3]:...

Installing 0.61 in Solaris (SunOS 5.5) I am getting the following error when I try to make docs or make help [28] /home/res8/gilp/R : make docs make: Fatal error: Don't know how to make target `../src/library/*/man/*.Rd' Current working directory /home/res8/gilp/R-versions/R-0.61/etc Paul Gilbert -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.c...

...iously > I split it into five pieces in order to load it into R. (Has anything > changed which might suggest I shouldn't need to do this anymore?) The > five files are called dse1, dse2, dsex1, dsex2, and tframe.With the > new way of handling libraries I put these in > /home/res/gilp/dse/pub/Rdse/R and ran > [58] /home/res/gilp/dse/pub : R INSTALL Rdse dse1 > Installing package `Rdse' ... > R > DONE > No man pages found in package `Rdse' > (BTW this prepend $pwd to Rdse and does not seem to like a fully > qualified path for the location, so it has...

There seems to be a minor problem in .First.lib: the library argument is all of $RLIBS. I think it should be just the one directory from which the package is being taken. Paul Gilbert -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or

...2 FORTRAN compiler: g77 -g -O2 X11 support: yes Gnome support: no Tcl/Tk support: no R profiling support: yes R as a shared library: no _____ my guess at important parts from the make: ... make[3]: Entering directory `/home/mfa5/gilp/R/R-1.3.1.gnu3.0.2/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c approx.c -o approx.o ... g77 -g -O2 -c eigen.f -o eigen.o g77 -g -O2 -c lminfl.f -o lminfl.o g77 -g -O2 -c blas.f -o blas.o ar cr libappl.a approx.o bakslv.o binni...

This example from the INSTALL help seems to be broken in R 0.90.1 (on Solaris): gilp/dse : R CMD check --help Usage: R CMD check [options] [-l lib] pkg_1 ... pkg_n I'm trying to figure out how to request more nsize and vsize when using R CMD check. Paul Gilbert -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http:...

I'm a novice with gdb but the following is the result of a segfault problem I've been having with 1.2.0. If there is something else I should do to get more useful information at this point, then someone please let me know. Paul Gilbert ______ [5] /home/mfa5/gilp/zzot : R -d gdb GNU gdb 4.17 Copyright 1998 Free Software Foundation, Inc. GDB is free software, covered by the GNU General Public License, and you are welcome to change it and/or distribute copies of it under certain conditions. Type "show copying" to see the conditions. There is absolut...

...les ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for portable use of $BLAS_LIBS ... OK * checking tests ... make[3]: Entering directory `/home/mfa/gilp/toolchain/R/src/R-rc/tests/stats.Rcheck/tests' Running 'nafns.R' Running 'nls.R' Comparing 'nls.Rout' to 'nls.Rout.save' ...134c134 < Achieved convergence tolerance: 2.75e-06 --- > Achieved convergence tolerance: 2.74e-06 145c145 < 3: 0.00060...