Displaying 2 results from an estimated 2 matches for "gi50jun11".
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gi20jun11
2013 Feb 12
3
subsetting data file by intoducing a second file
...0.000000 0 0.001513 0 0 0 0.000000 0 0 0 0 0 0.000000 0 0.000000
Gi475Jun11 0.000000 0 0.000000 0 0.000000 0 0 0 0.000000 0 0 0 0 0 0.000000 0 0.000000
Gi50Jun11 0.000000 0 0.000000 0 0.000000 0 0 0 0.000000 0 0 0 0 0 0.000000 0 0.000000
...
#second file which has the names that I want to subset
c_bg
[,1]
[1,] "Otu0128"
[2,] "Otu0218"
[3,] &quo...
2013 Feb 13
5
spearman correlation and p-value as a matrix
...0000 0 0.000000
> Gi425Jun11 0.000000 0 0.000000 0 0.000000 0 0 0 0.000000 0 0 0 0 0 0.000000 0 0.000000
> Gi45Jun11 0.000000 0 0.000000 0 0.001513 0 0 0 0.000000 0 0 0 0 0 0.000000 0 0.000000
> Gi475Jun11 0.000000 0 0.000000 0 0.000000 0 0 0 0.000000 0 0 0 0 0 0.000000 0 0.000000
> Gi50Jun11 0.000000 0 0.000000 0 0.000000 0 0 0 0.000000 0 0 0 0 0 0.000000 0 0.000000
ag <- read.table (file.choose(), header=T, row.names)
for (i in 1:(ncol(bg)))
for (j in 1:(ncol(ag)))
print(c(i,j))
final_matrix <- matrix(rep("0",ncol(bg)*ncol(ag)),ncol=ncol(bg),nrow=ncol(ag))
cor &l...