Displaying 6 results from an estimated 6 matches for "ggtree".
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gtree
2018 May 04
3
why the length and width of a plot region produced by the dev.new() function cannot be correctly set?
...ays 5.3 inches whatever the values I set, and the length of it is alway smaller than what I set. Could you tell me how to produce a graphic divice with correct size that I set? I need this function because the graphic divice cannot accomendate all of the graph I make with some of plot tools such as ggtree. In ggtree plot, part of the tree tips label are invisible (https://www.dropbox.com/s/87gyusx7ay1xxu8/tree.pdf?dl=0) even I set "par(mar=rep(0,4))". So I think I must plot the tree on a larger graphic device. ?Best regards.?
>?
>??[[alternative?HTML?version?deleted]]
>?
>?__...
2018 May 05
1
why the length and width of a plot region produced by the dev.new() function cannot be correctly set?
...a?
non-screen?device?such?as?png()?or?pdf()?instead?of?the?default?device.
Duncan?Murdoch
??Could?you?tell?me?how?to?produce?a?graphic?divice?with?correct?size?
that?I?set??I?need?this?function?because?the?graphic?divice?cannot?
accomendate?all?of?the?graph?I?make?with?some?of?plot?tools?such?as?
ggtree.?In?ggtree?plot,?part?of?the?tree?tips?label?are?invisible?
(https://www.dropbox.com/s/87gyusx7ay1xxu8/tree.pdf?dl=0)?even?I?set?
"par(mar=rep(0,4))".?So?I?think?I?must?plot?the?tree?on?a?larger?graphic?
device.??Best?regards.
>?
>?
>>???
>>????[[alternative?HTML?version...
2018 May 04
0
why the length and width of a plot region produced by the dev.new() function cannot be correctly set?
...ays 5.3 inches whatever the values I set, and the length of it is alway smaller than what I set. Could you tell me how to produce a graphic divice with correct size that I set? I need this function because the graphic divice cannot accomendate all of the graph I make with some of plot tools such as ggtree. In ggtree plot, part of the tree tips label are invisible (https://www.dropbox.com/s/87gyusx7ay1xxu8/tree.pdf?dl=0) even I set "par(mar=rep(0,4))". So I think I must plot the tree on a larger graphic device.
- The argument to give dev.new is 'height', not 'length'.
-...
2018 May 05
0
why the length and width of a plot region produced by the dev.new() function cannot be correctly set?
...)?or?pdf()?instead?of?the?default?device.
>
> Duncan?Murdoch
>
> ??Could?you?tell?me?how?to?produce?a?graphic?divice?with?correct?size
> that?I?set??I?need?this?function?because?the?graphic?divice?cannot
> accomendate?all?of?the?graph?I?make?with?some?of?plot?tools?such?as
> ggtree.?In?ggtree?plot,?part?of?the?tree?tips?label?are?invisible
> (https://www.dropbox.com/s/87gyusx7ay1xxu8/tree.pdf?dl=0)?even?I?set
> "par(mar=rep(0,4))".?So?I?think?I?must?plot?the?tree?on?a?larger?graphic
> device.??Best?regards.
> >
> >
> >>
> >>...
2018 May 04
0
why the length and width of a plot region produced by the dev.new() function cannot be correctly set?
> On May 3, 2018, at 6:28 PM, sunyeping via R-help <r-help at r-project.org> wrote:
>
> When I check the size of the plot region usingdev.size("in")a new plot region is produced and in the Rconsole I get[1] 5.333333 5.322917
Your test is all mangleed together. You failed in your duty to read the list info and the Posting guide . NO HTML!
> If I mean to produce a plot
2018 May 04
5
why the length and width of a plot region produced by the dev.new() function cannot be correctly set?
When I check the size of the plot region usingdev.size("in")a new plot region is produced and in the Rconsole I get[1] 5.333333 5.322917If I mean to produce a plot region with size setting bydev.new(length=3,width=3)a plot region is produced, but the size is [2.281250, 5.322917], as detected by the de.size function. If I type:dev.new(length=10,width=10)I get a plot region of with the