search for: getnumberhit

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2005 Jul 12
1
allocation of large matrix failing
...but R is not even using that much (I start R with more memory and it stays constant) Also, I start R as I normally do and I allocate a matrix of that size and it returns instantly, so I am inclined to think that this is not a memory/GC issue, but I submit it may be. <code> int numHits = seq.GetNumberHits(); Rprintf("numHits:%d\n", numHits); Rprintf("before allocation...\n"); SEXP oligos, matrix; PROTECT(oligos = NEW_LIST(numHits)); Rprintf("allocated oligo list...\n"); PROTECT(matrix = NEW_INTEGER(numHits*8)); Rprintf("entering looop...\n"); <output&...