Displaying 6 results from an estimated 6 matches for "getdtd".
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getdt
2013 Mar 20
1
htmlParse (from XML library) working sporadically in the same code
...or: failed to load HTTP resource
Error is coming from the following line in htmlParse code:
ans <- .Call("RS_XML_ParseTree", as.character(file), handlers, as.logical(ignoreBlanks), as.logical(replaceEntities), as.logical(asText), as.logical(trim), as.logical(validate), as.logical(getDTD), as.logical(isURL), as.logical(addAttributeNamespaces), as.logical(useInternalNodes), as.logical(isHTML), as.logical(isSchema), as.logical(fullNamespaceInfo), as.character(encoding), as.logical(useDotNames), xinclude, error, addFinalizer, as.integer(options), PACKAGE = "XML")
By the w...
2012 Aug 10
3
Parsing large XML documents in R - how to optimize the speed?
...-various attributes
-a list of 'peptide' objects, each of which containing:
-various attributes
-a list of 'aa' objects, each of which consisting of a couple of
attributes.
Here is the basic structure of the code:
xml.doc <- xmlTreeParse("file", getDTD=FALSE, useInternalNodes=TRUE)
result <- new('S4_result_class')
result@proteins <- xpathApply(xml.doc, "//model/protein",
function(protein.node) {
protein <- new('S4_protein_class')
## fill in a couple of attributes of the protein object using xmlValue
and xmlA...
2011 Jun 07
1
XML segfault on some architectures
...e)
*** caught segfault ***
address 0x500001c4f, cause 'memory not mapped'
Traceback:
1: .Call("RS_XML_ParseTree", as.character(file), handlers, as.logical(ignoreBlanks), as.logical(replaceEntities), as.logical(asText), as.logical(trim), as.logical(validate), as.logical(getDTD), as.logical(isURL), as.logical(addAttributeNamespaces), as.logical(useInternalNodes), FALSE, as.logical(isSchema), as.logical(fullNamespaceInfo), as.character(encoding), as.logical(useDotNames), xinclude, error, addFinalizer, PACKAGE = "XML")
2: xmlTreeParse(fileName)
P...
2012 May 15
1
KEGGSOAP installation error
...ed
*** caught segfault ***
address 0x500001c4f, cause 'memory not mapped'
Traceback:
1: .Call("RS_XML_ParseTree", as.character(file), handlers,
as.logical(ignoreBlanks), as.logical(replaceEntities),
as.logical(asText), as.logical(trim), as.logical(validate),
as.logical(getDTD), as.logical(isURL),
as.logical(addAttributeNamespaces), as.logical(useInternalNodes), FALSE,
as.logical(isSchema), as.logical(fullNamespaceInfo),
as.character(encoding), as.logical(useDotNames), xinclude, error,
addFinalizer, PACKAGE = "XML")
2: xmlParse(url)
3: parseSc...
2011 Aug 26
0
How to use xmlFlatListTree?
Dear Forum,
I haven't programmed in a while, and I'm new to R, so please keep your
answers simple.
I'm trying to analyse data in an xml file. I successfully loaded the data
into lists using:
doc <- xmlTreeParse("PSparsed.xml", getDTD = F)
I was going to write a script to traverse the tree and flatten the hierarchy
into a rectangular form to fit into a data.frame, but it seems like
xmlHashTree and xmlFlatListTree are made to do this for me. I've been
following the examples in the package specification document to figure out...
2005 Mar 11
3
XML to data frame or list
Dear useRs,
I have a simple/RTFM question about XML parsing. Given an XML file,
such as (fragment)
<A>100</A>
<B>23</B>
<C>true</C>
how do I import it in a data frame or list, so that the values (100,
23, true) can be accessed through the names A, B and C?
I installed the XML package and looked over the documentation...
however after 20 minutes and a couple of