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2019 Oct 11
2
New matrix function
I think you are confusing package and function here. Plus some of the R Core packages, that you mention, contain functions that should probably be replaced by functions with better implementation from packages on CRAN. Best regards Morgan On Fri, 11 Oct 2019 15:22 Joris Meys, <jorismeys at gmail.com> wrote: > > > On Fri, Oct 11, 2019 at 3:55 PM Morgan Morgan <morgan.emailbox
2019 Jan 29
4
¿Como informe con tablas que se puedan organizar dinámicamente?
Buenas, erreros; Quiero pasar unas tablas resumen (data.frame) para que las investigue otra gente. Necesitaría que puedan pinchar en una columna y que se ordene según los valores de esa columna y así columna a columna. Podría generar sin dificultad tantas tablas ordenadas como columnas tiene el df, pero no sería práctico para esta gente. Si hay alguna solución evidente y fácil, agradecería que la
2018 Apr 24
1
data.table not available as win binary for R 3.5 yet?
Dear all, to my astonishment data.table cannot be installed on R 3.5 Windows. When checking the package page, the Windows binary is available for download. When checking the server however, I can't seem to find data.table. Also install.packages() says the package is only available in source form and may need compilation. Compiling using Rtools 35 is no problem. Is this merely an issue of
2009 Apr 01
2
bzero() before free()
Hi guys I've been browsing the code and at many places I found the following odd sequence: char * string=malloc(somesize); ? bzero(string,strlen(string)); free(string); I really don't see why you would zero a string and free the memory immediately afterwards? Any idea why this is done? Thanks! Met vriendelijke groet Best regards Bien ? vous Miguel SANDERS ArcelorMittal Gent UNIX
2018 Sep 18
3
memory footprint of readRDS()
Dear all, I tried to read in a 3.8Gb RDS file on a computer with 16Gb available memory. To my astonishment, the memory footprint of R rises quickly to over 13Gb and the attempt ends with an error that says "cannot allocate vector of size 5.8Gb". I would expect that 3 times the memory would be enough to read in that file, but apparently I was wrong. I checked the memory.limit() and that
2018 May 30
1
CRAN checks give errors when no tests are included
Dear all, as a follow-up to the question asked on R-package-devel (see link below): Someone sent a package to CRAN with a few problems. There's more things wrong with the submission, but one thing that really caught my eye was the following error: Warning message: running command '"C:/PROGRA~1/R/R-33~1.2/bin/x64/R" CMD BATCH --vanilla "testthat.R"
2015 Oct 21
3
Yet an other gent group issue
Hi I'm setting up samba 3 (Debian Wheezy) as a member of a samba 4 domain. wbinfo -u and wbinfo -g are working getent passwd -s winbind is working getent group -s winbind is NOT working However, getent group domain\ users is working and I cam switch to a domain user with the command su Here is the output of getent with domain users root at member-01:~# getent group domain\ users domain
2006 Mar 29
0
placing specific views within a subdirectory?
Can anyone show me how to go about placing specific views within a directory? ie: controllers/hello.rb views/hello/english/world.rhtml views/hello/english/people.rhtml views/hello/spanish/mundo.rhtml views/hello/spanish/gente.rhtml instead of the usual: controllers/hello.rb views/hello/world.rhtml views/hello/mundo.rhtml hello.rb currently contains the basic methods: class ChartsController
2005 Sep 21
1
ldap: No password in reply
Greetings, I'm trying to set up dovecot with ldap (and postfix) by following the page on the wiki. I configured everything, but something is wrong: dovecot: Sep 21 12:03:59 Info: auth(default): client in: AUTH 1 PLAIN service=IMAP secured lip=157.193.40.36 rip=157.193.44.68 dovecot: Sep 21 12:03:59 Info: auth(default): client out: CONT 1 dovecot: Sep 21 12:03:59 Info:
2018 Jun 09
4
Date class shows Inf as NA; this confuses the use of is.na()
And now I've seen I copied the wrong part of ?is.na > The default method for is.na applied to an atomic vector returns a logical vector of the same length as its argument x, containing TRUE for those elements marked NA or, for numeric or complex vectors, NaN, and FALSE otherwise. Key point being "atomic vector" here. On Sat, Jun 9, 2018 at 1:41 PM, Joris Meys <jorismeys at
2018 May 24
2
Creating S3 methods for S4 classes (coming from r-package-devel)
Dear all, I asked this question on r-package-devel but Martin Maechler pointed out this was more suited on R-devel. So here it goes: per the manual, one should create and register both the S3 and a S4 method if one needs a method for an S4 class for a function using S3 dispatching. This is cumbersome, and not very optimal. I was wondering if there's a better way to do this. Currently I
2018 Jan 31
3
Best practices in developing package: From a single file
On 31/01/2018 6:33 AM, Joris Meys wrote: > 3. given your criticism, I'd like your opinion on where I can improve > the documentation of https://github.com/CenterForStatistics-UGent/pim. > I'm currently busy updating the help files for a next release on CRAN, > so your input is more than welcome. After this invitation I sent some private comments to Joris. I would say his
2018 Mar 24
1
Possible bug: file.exists() always returns TRUE for prn.us.txt
Thank you. I was just replying my own message with the same information. Sorry for not doing the research properly before filing. Cheers Joris On Sat, Mar 24, 2018 at 11:36 AM, Duncan Murdoch <murdoch.duncan at gmail.com> wrote: > On 24/03/2018 6:16 AM, Joris Meys wrote: > >> Dear all, >> >> while preparing some exercises I came across some highly surprising
2018 Jun 08
2
Date class shows Inf as NA; this confuses the use of is.na()
Indeed. as_date is from lubridate, but the same holds for as.Date. The output and it's interpretation should be consistent, otherwise it leads to confusion when programming. I understand that the difference exists after asking a question on Stack Overflow: https://stackoverflow.com/q/50766089/914686 This understanding is never mentioned in the documentation - that an Inf date is actually
2006 Nov 27
3
gcc -m32 on a x86_64 box
Gents, I am trying to do a "gcc -m32" on a x86_64 box. gcc -m32 /tmp/jj.c /usr/bin/ld: crt1.o: No such file: No such file or directory collect2: ld returned 1 exit status This is the error I get. I did a "yum install glib.i386" successfully. there is no "yum install glib-dev...
2005 Sep 22
1
redirect and sieve
Hello, I have set up postfix to use dove-cot lda. This works perfect. Sieve works a bit... I would like to user the redirect feature of sieve. Having followed the wiki I added the following in my .dovecot.sieve : require "redirect"; if header :contains "subject" ["order", "buy"] { redirect "orders at company.dom"; } With this setup I
2018 Mar 16
2
Apparent bug in behavior of formulas with '-' operator for lm
Joris, the point is that 'z' is NOT used as a predictor in the model. Therefore it should not affect predictions. Also, I find it suspicious that the error only occurs when the response variable conitains missings and 'z' is unique (I have tested several other cases to confirm this). -Mark Op vr 16 mrt. 2018 om 13:03 schreef Joris Meys <jorismeys at gmail.com>: >
2018 Mar 14
2
truncation/rounding bug with write.csv
I don't see the issue here. It would be helpful if people would report their sessionInfo() when reporting whether or not they see this issue. Mine is > sessionInfo() R version 3.4.3 (2017-11-30) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Arch Linux Matrix products: default BLAS/LAPACK: /usr/lib/libopenblas_haswellp-r0.2.20.so locale: [1] LC_CTYPE=en_US.UTF-8
2018 May 02
7
download.file does not process gz files correctly (truncates them?)
Dear all, I've noticed by trying to download gz files from here : https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM907811 At the bottom one can download GSM907811.CEL.gz . If I download this manually and try oligo::read.celfiles("GSM907811.CEL.gz") everything works fine. (oligo is a bioConductor package) However, if I download using download.file("
2018 Jan 31
3
Best practices in developing package: From a single file
Dear All: stepping in late, but @Joris, if you would like to take 'from a single file' literally, have a look at: https://github.com/bpfaff/lp4rp (lp4rp: literate programming for R packages); Cheers, Bernhard ps: incidentally, within the noweb-file roxygen is employed. -----Urspr?ngliche Nachricht----- Von: R-devel [mailto:r-devel-bounces at r-project.org] Im Auftrag von Joris