search for: gensoapclientinterfac

Hi, I have a SOAP service, provided by BioMoby which I'd like to call via SSOAP. My service breaks during genSOAPClientInterface() genSOAPClientInterface(def=service, verbose = TRUE) Operation MassBank_Simple_2 Error: Cannot resolve SOAP type in empty context Problem seems to be that there are no <types> defined in the WSDL, and that the service passes input/output as a single XML BLOB in the body (full WSDL be...

...to a) fix SSOAP or b) fix the WSDL generator. I am a bit lost how to continue debugging here, any clues or help to get me going ? Thanks in advance, Yours, Steffen The code: library(SSOAP) w = processWSDL("http://biomoby.org/services/wsdl/ipb-halle.de/MassBank_Instruments") iface = genSOAPClientInterface(def = w, verbose=TRUE) The output and system info: > library(SSOAP) > > w = processWSDL("http://biomoby.org/services/wsdl/ipb-halle.de/MassBank_Instruments") > iface = genSOAPClientInterface(def = w, verbose=TRUE) Operation MassBank_Instruments Error in .types[[1]] : subs...

...function since I have no idea how to get the token into "non-character" form :) My code: library(SSOAP) chemspider_sectoken <- "xxxxxxxx-xxxx-xxxx-xxxx-xxxxxxxxxxxx" # (token was here) cs <- processWSDL("http://www.chemspider.com/Search.asmx?WSDL") # intf <- genSOAPClientInterface(,cs) # (this fails, see below. The Mass Spec API is correctly parsed. Therefore by hand:) csidlist <- .SOAP(server=cs@server, method="SimpleSearch", .soapArgs=list( query="Azithromycin", token=token...

...oes not have* any <wsdl:types>...</wsdl:types>, I created a local copy and inserted a dummy <wsdl:types>...</wsdl:types> element. Then, my simple snippet works: library(SSOAP) # Hacked local copy w = processWSDL("./MassBank_Instruments") # this breaks genSOAPClientInterface() w = processWSDL("http://biomoby.org/services/wsdl/ipb-halle.de/MassBank_Instruments") mobyRequest <- "<moby:MOBY xmlns:moby=\"http://www.biomoby.org/moby\"/>" iface = genSOAPClientInterface(def = w, verbose=TRUE) cat(iface at functions$MassBank_In...

...simpler service (WSDL manually created myself, but I am not sure it is correct although it validates): smg8EchoDef <- processWSDL("http://smg8.ulb.ac.be:8080/axis2/services/EchoService?wsdl", verbose=TRUE) processing (sub) schema http://smg8.ulb.ac.be/echoSvc/ 1 ) TheString genSOAPClientInterface(def = smg8EchoDef) Error in def at operations[[1]] : subscript out of bounds Indeed: length(smg8EchoDef at operations) [1] 0

...find a single example that works. I am using windows and here are the version numbers: R: 2.9.2 SSOAP: 0.5-3 XMLSchema: 0.1-1 XML: 2.6-0 The packages are up to date as per "Update packages". I tried all the examples that came under library/SSOAP/examples directory and most failed during genSOAPClientInterface(), while one failed right in processWSDL(). This is the most common error during genSOAPClientInterface(): Error in paste(" .elementFormQualified", .elementFormQualified, sep = " = ") : no slot of name "elementFormQualified" for this object of class "SchemaTyp...

...sult, so all that you need to try the sample is python 2.6 and ZSI (http://pywebsvcs.sourceforge.net/). The comment also has sample R client code which I am paste below: library(SSOAP) dataService <- processWSDL('C:/src/tmp/python/webserv/dataService/DataService.wsdl') def = genSOAPClientInterface(def = dataService, verbose = TRUE) res = def at functions$simpleQuery('select 1 as One') At this point, my priority is to get the deserialization of the response working, as I am able to workaround the first two issues in sending request. I would really appreciate if anyone can help m...

...ion 2.1.0,linux) to access SOAP service on NCBI (http://www.ncbi.nlm.nih.gov) its WSDL file is at http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl but some errors occured: > ncbi <- processWSDL("http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl") > ff <- genSOAPClientInterface(ncbi at operations[[1]], def = ncbi, ncbi at name, verbose=FALSE) > ff at functions$run_eInfo("db=pubmed") Error in toSOAPArray(obj, con, type = type) : no slot of name "elType" for this object of class "SOAPVoidType" what's wrong? I am looking foward...

Hello, I am a complete newbie to Web Services. I have set up an account to the MSN Developer Services and have acquired a key for Live Search via SOAP. I want to send and receive requests through R. I have already found out that the two packages I need is RCurl and SSOAP. I have installed them but now, as it's evident after long hours of trying, I have absolutely no idea how to use them. Is

i don't know perl,but on server site,they give soap:lite using perl , go to--->http://www.kegg.jp/kegg/soap/doc/keggapi_manual.html i want to download data from kegg server ,using R only, how to proceed? & what is mean by SOAP client driver ? also go to http://soap.genome.jp/KEGG.wsdl -- View this message in context:

Hi again, On Tue, 2010-06-22 at 10:02 +0200, Steffen Neumann wrote: > So, if XMLSchema:::processSchemaTypes() does not find > any custom/embedded type definitions, is it possibe to "inject" those > from the http://www.w3.org/2001/XMLSchema.xsd > into genSOAPClientInterface() instead ? Well, it's not possible, at least for me. This is as far as I got, any help appreciated: Thanks in advance, yours, Steffen xsd = XMLSchema:::parseSchemaDoc("http://www.w3.org/2001/XMLSchema.xsd") root = xmlRoot(xsd) types = XMLSchema:::processSchemaTypes(root, root,...

...eer = FALSE)) curlSetOpt(.opts = list(proxy = 'proxyserver:port'), curl = curl) wsdl <- getURL("XXXXXX.asmx?wsdl", ssl.verifypeer = FALSE) doc <- xmlInternalTreeParse(wsdl) def <- processWSDL(doc) ff <- genSOAPClientInterface(def = def) # Create the BatchMessage Array above bm <- new("BatchMessage", Message = "XXXX", MessageID = "XXXX", LocaleCode = "XXXX",...