Displaying 3 results from an estimated 3 matches for "geneticsbase".
2005 Oct 20
2
Error in building package indices
Dear R-devel members,
We are building a new package (GeneticsBase) for analysis of genetic data .
While doing "R CMD check with R-2.1.1, I am getting the following error:
** building package indices ...
Error in "colnames<-"(`*tmp*`, value = c("family", "pid", "father",
"mother", :
length of ...
2007 Jun 19
1
genetics package not working
Has something changed in R that requires an update in the genetics package
by Gregory Warnes? I am using R version 2.5.0
This used to work
> summary(founders[,59])
to prove that it is a genotype class
> class(founders[,59])
[1] "genotype" "factor"
Now when I issue the command:
> summary(founders[,59])
I get:
Error in attr(retval, "which") <- which :
2008 Mar 26
0
genotype analysis
...is based (see hwde
doc), but the package leaves out certain output rows that are shown in
the paper, and it doesn't show which of the output rows is
significant, as the paper does. Is there any simply way to interpret
"hwde" output (something like a p-value)?
Then there are the "GeneticsBase", "Genetics", "mapLD",
"Hardy-Weinberg" packages. Some work only for a single gene, some
apply a thing called "MLE", some "general linearized models", etc.
I know these questions are as much basic statistical than R questions.
But I'd be g...