Displaying 4 results from an estimated 4 matches for "genespr".
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genexpr
2003 Dec 26
1
Problems converting output from Sweave to PDf
...ving trouble converting the output from Sweave
into a valid PDF file.
I have created a simple .Rnw file which will become a
full vignette at some point, but during the
intermediate testing, I got errors from texi2dvi.
This is what I have done.
0) Using a Windows Xp system
1) Created a file called GeneSpring.Rnw
2) Convert this to Tex using Sweave("GeneSpring.Rnw")
from within R
3) Since I don't have LATEX for windows, I used
texi2dvi from the CYGWIN package
4) When I run the command in Cygwin 'texi2dvi -c -p
GeneSpring.tex' I get the error shown below.
5) When I edit the GeneS...
2004 May 17
0
Bioconductor 1.4 released
...ay (next generation of the depreciated marrayClasses, marrayNorm,
marrayPlots, marrayTools packages)
-- General analysis tools (rama, qvalue, pickgene, EBarrays, impute,
pamr, bim, )
-- QA/QC (arrayMagic, arrayQuality, LPE)
-- sequence analysis (pairseqsim, Biostrings)
-- interface to the GeneSpring data analysis program (GeneSpring)
TOOLS:
======
The released packages include tools which facilitate:
* annotation
* data management and organization through the use of the S4 class
structure
* identification of differentially expressed genes and clustering
* quality assurance and c...
2004 Oct 21
0
Limma B-statistics
Hi,
I need some help with the interpretation of B statistics generated by
eBayes in the limma package.
I want to compare gene expression in three groups of Affy samples. The
expression set has been imported from GeneSpring using GSload.expBC and a
linear model fitted to the data using a design based on the three groups
(6, 5, and 5 samples in each group, respectively). I have then made 3
contrasts to cover all possible comparisons within the data set, and
generated empirical Bayes statistics using eBayes. I...
2010 Jul 06
3
Help With ANOVA (corrected please ignore last email)
Sorry i had a misprint in the appendix code in the last email
Hi I needed some help with ANOVA
I have a problem with My ANOVA
analysis. I have a dataset with a known ANOVA p-value, however I can
not seem to re-create it in R.
I have created a list (zzzanova) which contains
1)Intensity Values
2)Group Number (6 Different Groups)
3)Sample Number (54 different samples)
this is created by the