Displaying 3 results from an estimated 3 matches for "genepattern".
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gem_pattern
2011 Oct 05
3
suppressing stderr output from system() calls
...ot;)
sink(con, type="message")
system("ls")
sink(NULL, type="message")
close(con)
# instead of the output going to stderr.txt, it gets printed to the console.
# no good either
capture.output(system("ls"))
character(0)
This is an issue, since i'm writing GenePattern modules to run R code, and if anything is written to stderr, then the job gets hit with a 'job failed' status, when all that might have happened is an R package got installed, or a file got downloaded via FTP.
Any ideas? Can system() and .Internal() output be redirected to stdout?
cheers,...
2016 Nov 08
2
proplems installing R 2.5 on Ubuntu 14.04
----- Am 8. Nov 2016 um 15:26 schrieb Johannes Ranke johannes.ranke at jrwb.de:
> Hi
>
> try
>
> apt-get build-dep r-base
>
> this installs the headers required for building current R, which probably also
> covers older versions - at least it will give you X11 headers.
>
> Good luck,
>
> Johannes
>
>
Hi Johannes,
i tried that and it didn't
2012 May 10
0
png support in R on linux
Hi there,
I am sure this question has been posted a couple times before but I could not find a good solution on the web.
Is there any way to get png() support in R on SUSE linux? We want to run GenePattern on that server and some workflows use R scripts plotting into pngs.
Best wishes
Kristian
R version 2.14.0 (2011-10-31)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=de_DE.UTF-8 LC_NUMERIC=C
[3] LC_TIME=de_DE.UTF-8 LC_COLLATE=de_DE.UTF-8
[5] LC_MONETARY=de_DE....