Displaying 2 results from an estimated 2 matches for "geneidtype".
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genditype
2009 Jun 24
1
Rscript segfaults with lazy loading
...To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: annotate
Loading required package: xtable
Loading required package: graph
An object of class ?GeneSet?
Slot "geneIdType":
geneIdType: Symbol
(cut out)
> class(c2)
[1] "GeneSetCollection"
attr(,"package")
[1] "GSEABase"
> sessionInfo()
R version 2.9.0 (2009-04-17)
i486-pc-linux-gnu
locale:
LC_CTYPE=en_AU.UTF-8;LC_NUMERIC=C;LC_TIME=en_AU.UTF-8;LC_COLLATE=en_AU.UTF-8;LC_MO...
2007 Sep 25
1
'load' does not properly add 'show' methods for classes extending 'list'
...ioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
An object of class "GeneSetCollection"
[[1]]
setName: NA
geneIds: X (total: 1)
geneIdType: Null
collectionType: Null
details: use 'details(object)'
Actually, the behavior is more complicate than appears; in a new R
session after loading /tmp/x.Rda, if I immediately do x[[1]] I get the
show,GeneSetCollection-method but not show,GeneSet-method.
Sorry for the somewhat obscure e...