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Anyone know what the problem is with IRIX 6.5 ? (esp if there is a solution?). Looks like the built-in math stuff is masking definitions from R source. (passing this along for a friend). best, -tony From: Andreas Krause <Andreas.Krause@genedata.com> To: "A.J. Rossini" <rossini@biostat.washington.edu> Subject: Re: splus shell escapes # download ./configure R is now configured for mips-sgi-irix6.5 Source directory: . Installation directory: /usr/local C compiler: gcc -g -O2 FORTRAN com...

...time to find. It would be nice if the [R] parser, or some previous engine that reads the source file, could given an explicit error saying that the "line was too long". EXAMPLE: In my case I got in perl '@Rfiles' was: "R/LogBook.R R/LogEntry.R R/GenePixData.R R/Layout.R R/ImaGeneData.R R/MicroarrayData.PLOT.R R/QualityData.R R/MicroarrayData.R R/MAData.R R/MAData.NORM.R R/zzz.R R/Replicates.R R/SMA.R R/FieldFilter.R R/Filter.R R/QuantArrayData.R R/RGData.R R/RawData.R R/000.R R/MicroarrayData.IO.R R/LayoutGroups.R R/BFilter.R R/com.braju.sma.R R/Copy of TFilter.R R/Copy of SSMa...

...bica1/tophat/finaltrans/tophat/0125diff_out') Creating database /home/sbica1/tophat/finaltrans/tophat/0125diff_out/cuffData.db Reading /home/sbica1/tophat/finaltrans/tophat/0125diff_out/genes.fpkm_tracking Checking samples table... Populating samples table... Writing genes table Reshaping geneData table Recasting Writing gene Data table Reading /home/sbica1/tophat/finaltrans/tophat/0125diff_out/gene_exp.diff Error in function (classes, fdef, mtable) : unable to find an inherited method for function "make.db.names", for signature "SQLiteConnection", "integer"...

...> > the source file, > > > could given an explicit error saying that the "line was too long". > > > > > > EXAMPLE: > > > In my case I got in perl '@Rfiles' was: > > > "R/LogBook.R R/LogEntry.R R/GenePixData.R R/Layout.R R/ImaGeneData.R > > > R/MicroarrayData.PLOT.R R/QualityData.R R/MicroarrayData.R R/MAData.R > > > R/MAData.NORM.R R/zzz.R R/Replicates.R R/SMA.R R/FieldFilter.R > > R/Filter.R > > > R/QuantArrayData.R R/RGData.R R/RawData.R R/000.R R/MicroarrayData.IO.R > > > R/LayoutGro...

...ipsec_sa_lifetime_time 28800 sec; sa_index esp_01; }; sa ah_01 { sa_protocol ah; ah_auth_alg { hmac_sha1; hmac_md5; }; }; sa esp_01 { sa_protocol esp; esp_enc_alg { aes128_cbc; 3des_cbc; }; esp_auth_alg { hmac_sha1; hmac_md5; }; }; # biosa-vm1.ch.genedata.com remote biosa-vm1.nowhere.com { acceptable_kmp { ikev2; }; ikev2 { my_id fqdn "biosa-vm4.nowhere.com"; peers_id fqdn "biosa-vm1.nowhere.com"; peers_ipaddr 172.20.36.52 port 500; kmp_enc_alg { aes2...

...ome previous engine that reads > the source file, > > could given an explicit error saying that the "line was too long". > > > > EXAMPLE: > > In my case I got in perl '@Rfiles' was: > > "R/LogBook.R R/LogEntry.R R/GenePixData.R R/Layout.R R/ImaGeneData.R > > R/MicroarrayData.PLOT.R R/QualityData.R R/MicroarrayData.R R/MAData.R > > R/MAData.NORM.R R/zzz.R R/Replicates.R R/SMA.R R/FieldFilter.R > R/Filter.R > > R/QuantArrayData.R R/RGData.R R/RawData.R R/000.R R/MicroarrayData.IO.R > > R/LayoutGroups.R R/BFilter.R R/com.b...

Dear all, I found a strange result using R's weightedMedian function. Consider the following: > x <- c (0.2, 0.3, 0.5) > w <- c (1,1,2) > weightedMedian(x,w) > 0.3666 In cases like above, when the weights are integers, one could argue that the weighted median should be the same as the standard median with the elements repeated according to their weights. This is

Full_Name: Dr. Bernd Winkler Version: 1.2.2 OS: Linux Submission from: (NULL) (194.59.179.176) Hi all, having updated to version 1.2.2 last week I experienced some strange behaviour of the hist function. I want to plot a histogram of frequencies resp. counts, for example poisson random numbers, on a predefined and fixed x scale > hist(rpois(500, 2), breaks=0:10) But instead of the