Displaying 2 results from an estimated 2 matches for "gelist".
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2007 Apr 20
1
nlme trouble
...I used exp(1) just to be sure (tried with just
log(x) as well)
ge = read.table("G:\\SSNon-Linear\\BINDING DATA fixed DESCRIPTORS
ONLY.csv",sep=",",header=TRUE)
#Load in my data set
ge$study = as.factor(ge$study) #Force study to be
a factor variable
gelist = nlsList(RBA~SSBiLin(Molecular.Volume,nu,a,b,c,x0)|study,data=ge)
#This is where I get the error
contr = nlmeControl(pnlsTol=0.3)
ge0.nlme=nlme(gelist,control=contr,verbose=F)
##########Errors#######################
> gelist = nlsList(RBA~SSBiLin(Molecular.Volume,nu,a,b,c,x0)|study,data=ge...
2013 Jun 26
2
Error on executing functions from installed package
...ng error at the following position of the code:
# this profile the information chromosome wise and results in "clRes"
> clRes = clusterApplyLB(cl, Chrs, profilingChr, GenoRanges = GenoRanges,
Sample = Sample)
> class(clRes)
[1] "list"
> clRes
[[1]]
S4 Object of class GElist; 14 features
start : 14350 69251 84185 116264 153924
end : 18349 73250 88184 120263 157923
chr : chr20 chr20 chr20 chr20 chr20
strand : * * * * *
binscore : NA
> chrcomb <- sapply(result, function(x) rbind(x))
Error in rbind(x) : no method for coercing this S4 class to a vector
The abo...