search for: gc2

...06.78 203.68 306.98 5 e 0.609271523 276.32 214.73 307.03 6 f 0.626373626 333.93 249.28 421.97 7 g 0.618834081 216.22 200.94 236.27 All columns have 3722 rows. The columns repeat in that pattern out to AA_012_C. This is the script that I've tried: gc<-read.delim("AA1_3_GC.txt") gc2<-gc[,-c(1:2)] res=cbind() for(i in colnames(gc[,-1])){ temp<-loess(i~GC,gc2) temp2<-predict(temp) if (length(res)==0){ res=temp2 }else{ res=cbind(res,temp2) } } But I keep getti...

...306.78 203.68 306.98 5 e 0.609271523 276.32 214.73 307.03 6 f 0.626373626 333.93 249.28 421.97 7 g 0.618834081 216.22 200.94 236.27 All columns have 3722 rows. The columns repeat in that pattern out to AA_012_C. This is the script that I've tried: gc<-read.delim("AA1_3_GC.txt") gc2<-gc[,-c(1:2)] res=cbind() for(i in colnames(gc[,-1])){ temp<-loess(i~GC,gc2) temp2<-predict(temp) if (length(res)==0){ res=temp2 }else{ res=cbind(res,temp2) } } But I keep getti...

...of the column with NA. In other words, if the median of one column is 500, any value in that column that is less than 50 should become NA. Doing a lot of searches, it seems like I should be using apply. But when I put the if statement inside like this, I get serious errors: > test<-apply(gc2,2,function(x){if(x<(0.1*median(x))), NA}) Error: unexpected ',' in "test<-apply(gc2,2,function(x){if(x<(0.1*median(x)))," > test<-apply(gc2,2,function(x){if(x<(0.1*median(x))) NA}) There were 50 or more warnings (use warnings() to see the first 50) In if (x <...

...ike platforms. o Function GC() has gained a new argument NA.GC defaulting to NA to say what should be returned when the GC content cannot be computed from data (for instance with a sequence like NNNNNNNNNNNN). The argument oldGC is now deprecated and a warning is issued. Functions GC1(), GC2(), GC3() are now simple wrappers for the more general GCpos() function. The new argument frame allows to take the frame into account for CDS. o Function read.fasta() now supports comment lines starting by a semicolon character in FASTA files. An example of such a file is provided in sequen...

...ike platforms. o Function GC() has gained a new argument NA.GC defaulting to NA to say what should be returned when the GC content cannot be computed from data (for instance with a sequence like NNNNNNNNNNNN). The argument oldGC is now deprecated and a warning is issued. Functions GC1(), GC2(), GC3() are now simple wrappers for the more general GCpos() function. The new argument frame allows to take the frame into account for CDS. o Function read.fasta() now supports comment lines starting by a semicolon character in FASTA files. An example of such a file is provided in sequen...

Hi all! After that good thread "DGD patch not detecting dead gateway" I was able to set up a Load Balancing with ping based DGD (without Julian Anastasov patch). But now I''m facing a new problem and tried some options, with only partial solutions. I made a script based on http://www.mail-archive.com/lartc@mailman.ds9a.nl/msg16257.html (Thank you Manish Kathuria),

depends on "autoconf: regenerate configure scripts with 4.4 version" This series removes some of the really old deadwood from the tools build and makes some other things which are on their way out configurable at build time with a default depending on how far down the slope I judge them to be. * nuke in tree copy of libaio * nuke obsolete tools: xsview, miniterm, lomount & sv *