search for: gbk2g2

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2007 Apr 24
0
new version of seqinR
...(), used to extract breakpoints in rearranged nucleotide skews. This function uses the segmented package to define the position of the breakpoints. o New function draw.rearranged.oriloc() available, to plot nucleotide skews on artificially rearranged prokaryotic chromosomes. o New function gbk2g2.euk() available. Similarly to gbk2g2(), this function extracts the coding sequence annotations from a GenBank format file. This function is specifically designed for eukaryotic sequences, i.e. with introns. The output file will contain the coordinates of the exons, along with the name of t...
2007 Apr 24
0
new version of seqinR
...(), used to extract breakpoints in rearranged nucleotide skews. This function uses the segmented package to define the position of the breakpoints. o New function draw.rearranged.oriloc() available, to plot nucleotide skews on artificially rearranged prokaryotic chromosomes. o New function gbk2g2.euk() available. Similarly to gbk2g2(), this function extracts the coding sequence annotations from a GenBank format file. This function is specifically designed for eukaryotic sequences, i.e. with introns. The output file will contain the coordinates of the exons, along with the name of t...