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...try mona at first. But i get the an error. hc<-read.table("all.txt", header=TRUE, sep="\t", row.names=1) srt(hc) `data.frame': 51 obs. of 59 variables: $ G1p : int 2 1 1 1 1 1 1 1 1 1 ... $ G1q : int 1 1 1 1 1 1 1 1 1 1 ... $ G2p : int 1 1 1 1 1 1 1 1 1 1 ... $ G2q : int 1 1 1 1 1 1 1 1 1 1 ... $ G3p : int 1 1 1 1 1 1 1 1 1 1 ... m<-mona(hc) Error in mona(hc) : All variables must be binary (factor with 2 levels). I find this strange when the cluster dataset "animals" have the same structure as my data. srt(animals) `data.frame': 20 o...