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2008 Aug 22
2
help needed for HWE.exact in library "genetics"
Hi, I have a genotype data for both case and controls and would like to calculate the HW p-value. However, since the number of one genotype is 0, I got wired result. Would someone help me to figure it out? Or confirm it's right? Thanks a lot. ============ > library( "genetics" ) NOTE: THIS P...
2009 Feb 17
1
:How to insert a column in a data frame
Hi dear list, I wonder if somebody can help me with this. I have a text file with 300 rows and around 300000 columns and I need to insert a column that has the number 1 in every row. This new column should be placed between columns 6 and 7. As an example: I would want to insert a column (consiting just of the number 1 in every row, as in column 6) between columns 6 and 7. 847 847 0 0 2 1 G G T C A G T T C G A C C C G C A A A G G G G A C A T T 847 847 0 0 2 1 G G T C A G T T C G A C C C G C A A A G G G G A C A T T 847 847 0 0 2 1 G G T C A G T T C G A C C C G C A A A G G G G A C A T T 847 84...
2010 Jul 21
0
Samba install on AIX
ibm68p0:/home/b08chm/m4/m4-1.4.14] # oslevel -s 6100-04-02-1007 [ibm68p0:/home/b08chm/m4/m4-1.4.14] # $ make make all-recursive Making all in . Target "all-am" is up to date. Making all in examples Target "all" is up to date. Making all in lib rm -f alloca.h-t alloca.h && { echo '/* DO NOT EDIT! GENERATED AUTOMATICALLY! */'; cat ./alloca.in.h; } > alloca.h-t && mv -f all...
2013 Mar 07
4
[PATCH 0/4] Small refactorings of the protocol layer.
As the start of work to add remote support, I'm taking a close look at the protocol layer in the library. These are some small cleanups. Rich.
2005 Nov 22
1
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2005 Nov 21
1
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$B!zCK@-$O40A4L5NAEPO?$r$7$FBT$D$@$1$G$9!#(B $B&gt;/$74i$bA*$s$@J}$,$$$$$+$b!)!)$=$l$O$*G$$;$7$^$9!#(B http://www.00-love5.com/serebu/s.html $B!V(BYAHOO!$B!W!V(BGoogle$B!W$N8!:w7k2L$O$=$N%5%$%H$N?M5$!"(B $B?.MjEY!J%f!<%6!<$K$h$kEjI<!K$G=g0L$,7hDj$7$^$9!#(B $BEv%5%$%H$O8!:w%+%F%4%j(B $B!TAG?M%[%9%H!U$K$F%H%C%W%Z!<%8$G&gt...
2007 Apr 11
1
Programming Problem (for loop, random # control, 3 dimentional graph)
Dear List, This is just a programming problem which i cannot seem to figure out. I am trying to get a set of power from a test (say, kolmogorov smirnov) out of a distribution (say, G-K distribution) as follows. I am trying to reduce to pain of writing the whole set of data points (p# below) using "for" loop. However, I...
2008 Mar 24
1
resampling from string when it runs across multiple lines
Hi, I need to resample from a long string, which is written in many lines with carriage-return marks at the end of each line. Perhaps because the data looks like a matrix, using the code: sample(data, 25, replace=T) gives me 25 columns of characters from the data because it is resampling whole columns. What I would like it to do is...
2008 Mar 24
1
resampling from string when it runs across multiple lines
Hi, I need to resample from a long string, which is written in many lines with carriage-return marks at the end of each line. Perhaps because the data looks like a matrix, using the code: sample(data, 25, replace=T) gives me 25 columns of characters from the data because it is resampling whole columns. What I would like it to do is...
2007 Jul 26
3
substituting dots in the names of the columns (sub, gsub, regexpr)
Dear R users, I have the following two problems, related to the function sub, grep, regexpr and similia. The header of the file(s) I have to import is like this. c("y (m)", "BD (g/cm3)", "PR (Mpa)", "Ks (m/s)", "SP g./g.", "P (m3/m3)", "theta1 (g/g)", "th...
2015 Jun 06
0
[PATCH 2/5] threads: Acquire and release the lock around each public guestfs_* API.
Since each ACQUIRE_LOCK/RELEASE_LOCK call must balance, this code is difficult to debug. Enable DEBUG_LOCK to add some prints which can help. The only definitive list of public APIs is found indirectly in the generator (in generator/c.ml : globals). --- generator/c.ml | 18 ++++++++++++++ src/errors.c | 66 ++++++++++++++++++++++++++++++++++++++++++++++---- src/ev...
2016 Aug 01
4
OpenSSH 7.3p1 can't be build on Solaris 10
-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Solaris 10 x64 kernel 150401-35 LibreSSL 2.4.1 GCC 5.2 ./configure --with-privsep-user=sshd --with-pam --with-pie --with-ssl-dir=/usr/local 'CFLAGS=-O3 -m64 -mtune=native -pipe' 'LDFLAGS=-m64' successful. gmake produces error: root @ khor...
2015 Jun 06
7
[PATCH 0/5] Add support for thread-safe handle.
This patch isn't ready to go upstream. In fact, I think we might do a quick 1.30 release soon, and save this patch, and also the extensive changes proposed for the test suite[1], to after 1.30. Currently it is not safe to use the same handle from multiple threads, unless you implement your own mutexes. See: http://libguest...
2016 Apr 04
2
multiple bar plot annotation text labelling
Readers, The attempt is to create a bar plot with text labels adjacent to each datum value. Data file: 1,3,A 1,8,B 1,1,C 1,9,D 2,5,C 2,4,E 2,2,F 2,0,G testbarplot<-read.csv('data1.csv', header=FALSE) barplot(axes=FALSE, ann=FALSE, horiz=TRUE, testbarplot[,2], ylab= 'group', xlab= '(x values)', space=c(1,0,0,0, 1,0,0,0)) text(testbarplot[,2], testbarplot[,1], c('a', 'b', 'c', 'd', 'c...
2014 Jan 21
1
[PATCH 1/2] sysprep: Update comments.
--- sysprep/sysprep_operation.mli | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/sysprep/sysprep_operation.mli b/sysprep/sysprep_operation.mli index 61dde72..eb89db4 100644 --- a/sysprep/sysprep_operation.mli +++ b/sysprep/sysprep_operation.mli @@ -16,14 +16,16 @@ * 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. *...
2015 Feb 14
2
[PATCH 0/2] Change guestfs__*
libguestfs has used double and triple underscores in identifiers. These aren't valid for global names in C++. (http://stackoverflow.com/a/228797) These large but completely mechanical patches change the illegal identifiers to legal ones. Rich.
2015 Nov 10
1
[PATCH] OCaml tools: use open_guestfs everywhere
Instead of creating Guestfs handles and manually apply common options (e.g. debug and trace), use the open_guestfs in Common_utils. This also applies the common options to handles which didn't set them before, so we can inspect also their messages if needed. --- builder/builder.ml | 8 ++------ customiz...
2011 Sep 02
3
merge some columns
Dear all, I would like to know how to merge columns like: Input file: V1 V2 V3 V4 V5 V6 1 G A G G G G 2 A A G A A G Desired output file: V1 V2 V3 1 G/A G/G G/G 2 A/A G/A A/G So for every 2 consecutive columns merge their content into one. Thanks in advance. [[alternative HTML version deleted]]
2016 Dec 11
3
[PATCH 0/2] generic function for temporary path generation
Cosmetic change as suggested in this previous patch: https://www.redhat.com/archives/libguestfs/2016-November/msg00111.html Matteo Cafasso (2): lib: generic function for temporary path generation lib: use guestfs_int_make_temp_path to generate temporary files src/drives.c | 5 ++--- src/file.c...
2015 Jun 06
0
[PATCH 3/5] threads: Use thread-local storage for errors.
We permit the following constructs in libguestfs code: if (guestfs_some_call (g) == -1) { fprintf (stderr, "failed: error is %s\n", guestfs_last_error (g)); } and: guestfs_push_error_handler (g, NULL, NULL); guestfs_some_call (g); guestfs_pop_error_handler (g); Neither of these would be safe if...