search for: fx9_mf

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2011 May 22
0
Manipulating rownames for nMDS
...t my binary .csv data file looks like: "Site_Species..Treatment.Replicate" BLZ09_PA..CC.5 0 0 0 0 BX9_PA..CD.6 0 0 0 0 ST9_PA..CC.4 0 0 0 0 ST9_PA..CC.5 0 1 1 0 FX9_PA..CZ.8 0 0 0 0 FX9_PA..CY.8 0 0 0 0 BLZ09_MF..CC.4 0 0 0 0 BX9_MF..CD.1 0 0 0 0 ST9_MF..CC.3 1 0 0 1 ST9_MF..CC.4 1 0 0 1 FX9_MF..CH.1 1 1 0 0 FX9_MF..CH.2 1 0 0 0 This is the code I have thus far: datum <- read.csv(q, header=F) datum2 <- datum[,2:ncol(datum)] rownames(datum2) <- datum[,1] fit <- metaMDS(datum2, distance = "jaccard", k = 3, trymax=20, autotransform=F) fit. <- data.frame(sample=ro...