Displaying 1 result from an estimated 1 matches for "fx9_mf".
2011 May 22
0
Manipulating rownames for nMDS
...t my binary .csv data file looks like:
"Site_Species..Treatment.Replicate"
BLZ09_PA..CC.5 0 0 0 0
BX9_PA..CD.6 0 0 0 0
ST9_PA..CC.4 0 0 0 0
ST9_PA..CC.5 0 1 1 0
FX9_PA..CZ.8 0 0 0 0
FX9_PA..CY.8 0 0 0 0
BLZ09_MF..CC.4 0 0 0 0
BX9_MF..CD.1 0 0 0 0
ST9_MF..CC.3 1 0 0 1
ST9_MF..CC.4 1 0 0 1
FX9_MF..CH.1 1 1 0 0
FX9_MF..CH.2 1 0 0 0
This is the code I have thus far:
datum <- read.csv(q, header=F)
datum2 <- datum[,2:ncol(datum)]
rownames(datum2) <- datum[,1]
fit <- metaMDS(datum2, distance = "jaccard", k = 3, trymax=20,
autotransform=F)
fit. <- data.frame(sample=ro...