search for: fungal

Hi all, I would love to plot my data with R. I have abundance and frequency of fungal taxonomic data that should be plotted in the same graph. In Microsoft Excel is that possible but the graphic result is, as always, very poor. Is there a function that may let me plot these data in R? I have a matrix made of two columns, on is the relative abundance and the other is the relative fre...

...a compound isolated from a plant and observed its effect on the fungus *Fusarium oxysporum* by the food poisoning method. Solutions of the compound at concentrations of 0, 50, 100, 150, 200 and 250µg/ ml were added to sterilized medium in Petri dish (9cm dia.) and after transferring the mycelia of fungal strains, the dishes were incubated in the dark. When the mycelium of fungi reached the edges of the control (0µg/ ml) dishes, the antifungal indices were calculated. Each test was repeated three times and the average was calculated. The formula to calculate antifungal index (AI) was AI % = (1- D...

...you! But I really need your help for the usage of sigPathwy. Actually, I want a sliding window analysis for possible chromosome expression pattern mining. My research microorganism is a plant pathogen, Gibberella zeae, and I first used SAS to divide locus number with 10, 20, 30, or 40 on the fungal chromosome according to their location. I really want to see whether among the continual 10, 20, 30, or 40 locus has some expression pattern that different from rest genes. Because I know sigPathway (R package, pathway analysis with microarray data) can do this kind of job. What I use SAS to do is...

Dear R users: Analysis of the impact of a time-dependent covariate (GVHD or use of steroid after bone marrow transplantation) on two competing endpoints (invasive fungal infection and death) is frequently encountered in the setting of BMT data. Coxph package can be used as the following: for the analysis of GVHD: > gvhd -> coxph(Surv(start,stop,status = =1) ~ GVHD, data=bmt.data) and the data should be edited as the following: patient start...

Dear R users: Analysis of the impact of a time-dependent covariate (GVHD or use of steroid after bone marrow transplantation) on two competing endpoints (invasive fungal infection and death) is frequently encountered in the setting of BMT data. Coxph package can be used as the following: for the analysis of GVHD: > gvhd -> coxph(Surv(start,stop,status = =1) ~ GVHD, data=bmt.data) and the data should be edited as the following: patient start...

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I''m trying to compile the btrfs source code but I''m getting an error. Any suggestions? Thanks Joe [root@ol6 btrfs-progs]# uname -a Linux ol6.localdomain 2.6.39-400.17.2.el6uek.x86_64 #1 SMP Wed Mar 13 12:31:05 PDT 2013 x86_64 x86_64 x86_64 GNU/Linux [root@ol6 src]# git clone git://git.kernel.org/pub/scm/linux/kernel/git/mason/btrfs-progs.git Initialized empty Git repository in

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