search for: fst

Hi, I want to analyse DNA sequence data (mtDNA) in R as in calculate Fst, Heterozygosity and such summary statistics. Package Adagenet converts the DNA sequence into retaining only retaining the polymorphic sites and then calcuates Fst.. but is there any other way to do this? I mean analyse the DNA sequence as it is.. and calculate the statistics? Thanks! [[alternat...

Hi, (Sorry for the cross-posting.) After manually installing the 32-bit libjack packages on my 64-bit system, the original problem ("Can't connect to JACK") is gone; now I get a whole new set of errors instead :) When I try to start the Kontakt 5 VST from festige (via fst, via WINE), this is what I get: ============================ ----------------yo... lets see... "/home/pianist/win.write/vst/" Cannot lock down 68157440 byte memory area (Cannot allocate memory) Cannot lock down 4196401152 byte memory area (Cannot allocate memory) Cannot lock down 251658...

I want to create a MDS plot with pairwise Fst values derived from a population genetics project. My Fst values are in a tab-delimited file (lower triangle only) that I view with Excel. When I use the cmdscale command I get the message: Error in cmdscale(x) : Distances must be result of dist or a square matrix In addition: Warning message...

...s.c @@ -128,7 +128,155 @@ ssize_t sys_llistxattr(const char *path, char *list, size_t size) #else -#error You need to create xattr compatibility functions. +ssize_t sys_lgetxattr(const char *path, const char *name, void *value, size_t size) +{ + + + int attrfd; + size_t bufpos,r; + STRUCT_STAT fst; + + do_lstat(path,&fst); + if(S_ISLNK(fst.st_mode)) { + errno=EPERM; + return(-1); + } + + attrfd = attropen(path, name, O_RDONLY); + + if (attrfd<0) { + errno = ENOATTR; + return -1; + } + + + for(bufpos=0;bufpos<size;) { + r=read(attrfd,value+bufpos,512); + if (r==0) break; +...

Good afternoon. I am a master student in University of Porto in Portugal. At this moment I’m starting to use R, so I have some doubts. The aim of my analysis is: calculate a pairwise FST matrix from fasta file and creat a principal component analyses with adegenet package (I use seqinr and ape package to read this file, then I convert this file into a genind object with DNA2genind function provide in adegenet package). After convert my file the pairwise.fst function is not found....

I've installed (maybe not sucessfully) wine 20041201, fst 1.6 and jack_fst-1.2. I'm using jack-0.99 When I try and execute jack_fst such as: #jack_fst Crystal.dll I receive the following error: err:dosmem:setup_dos_mem Cannot use first megabyte for DOS address space, please report can't connect to JACK I assume that the first error message...

Dovecot-2.0.3 reported: Error: Maildir: Found unwanted directory /path/to/mail/user/cur/:2,FST, but rmdir() failed: Directory not empty and sure enough, this directory really does exist and contain a valid message file: # cd /path/to/mail/user/cur/ # ls -lR total 384 drwx------ 8 vmail vmail 272 Sep 24 09:06 . drwx------ 13 vmail vmail 442 Sep 24 09:06 .. -rw------- 5 vmail v...

...0.429 8 G G Yes 0.500 9 G B No 0.444 10 B B Yes 0.500 Please refer to the code below: ############################################################## # 1. v.fly=c("G","B") # Outcome is Green or Blue fly # 2. n=10 # No of Events / Trials # 3. v.smp = seq(1:n) # Event Id # 4. v.fst = sample(v.fly,n,rep=T) # Simulating First Draw # 5. v.sec = sample(v.fly,n,rep=T) # Simulating Second Draw # 6. df.1 = data.frame(sample = v.smp, fst=v.fst, sec = v.sec) # Clumping in a DF # 7. df.1$E.Occur = with(df.1, ifelse(fst==sec,TRUE,FALSE)) # Event Occurs, if color is same in both the...

...no non-missing arguments to min; returning Inf 2: In max(x) : no non-missing arguments to max; returning -Inf 3: In min(x) : no non-missing arguments to min; returning Inf 4: In max(x) : no non-missing arguments to max; returning -Inf Part of the original data looks like as follows: pos Fit Fst Fis 12794 0.928380160665041 -0.0877263098996843 0.934156378600823 12816 0.901040947621283 0.0382417096943425 0.897106109324759 12821 0.901040947621283 0.0382417096943425 0.897106109324759 12827 0.901040947621283 0.0382417096943425 0.897106109324759 12855 0....

Buenas tardes, Tengo un gráfico de dispersión y quiero indicar cada punto a qué individuo corresponde. ¿Cómo añado estas etiquetas de datos? El código es: res<-cmdscale(fst,k=2) plot(res[,1],res[,2],lwd=2,xlab="x",ylab="y") abline(h=0,v=0,col="blue") Muchas gracias, Gemma [[alternative HTML version deleted]]

...@@ -1452,15 +1459,26 @@ static int ext_write_adv(const char *path, const char *cfg, int devfd) return write_adv(path, cfg); } -static int install_loader(const char *path, int update_only) +static int install_loader(const char *path, int update_only, struct stat st) { - struct stat st, fst; + struct stat fst; int devfd, rv; const char *devname; - devfd = open_device(path, &st, &devname); - if (devfd < 0) - return 1; + /* Support dir, ext2, ext3 and ext4 filesystem (device or file block) */ + if S_ISDIR(st.st_mode) { + devfd = open_device(p...

Hi, Did you try install.packages('stats'). Let we know about your Sys.info() Karim On Fri, Jan 12, 2018 at 5:37 PM, imane hajar <imane.chafiki.fst at gmail.com> wrote: > hello , > > i am so sorry , i figure it out. > > im sending this msj to the moderator to stop the approval of the mail . > > have a good day. > > > 2018-01-12 15:42 GMT+00:00 imane hajar <imane.chafiki.fst at gmail.com>: > > >...

...copy them every day with a cron job. This is working fine the only problem is that he always changes the owner and group to the root user. Is there a possibility that he uses the user of the remote files and not the root user ? rsync --archive --exclude ".htaccess" /home/virtual/site5/fst/var/www/ html/ /home/virtual/site10/fst/var/www/html/aaa/ Thanks, Hans Mignon -- View this message in context: http://www.nabble.com/owner-and-group-tf3192124.html#a8861757 Sent from the Samba - rsync mailing list archive at Nabble.com.

...) then Progress.set_up_progress_bar ~machine_readable g; g#launch (); @@ -368,7 +378,7 @@ read the man page virt-resize(1). let insize = g#blockdev_getsize64 "/dev/sda" in let outsize = g#blockdev_getsize64 "/dev/sdb" in debug "%s size %Ld bytes" (fst infile) insize; - debug "%s size %Ld bytes" outfile outsize; + debug "%s size %Ld bytes" (fst outfile) outsize; sectsize, insize, outsize in let max_bootloader = @@ -390,7 +400,7 @@ read the man page virt-resize(1). (fst infile) insize; if outsize <...

...) then Progress.set_up_progress_bar ~machine_readable g; g#launch (); @@ -368,7 +384,7 @@ read the man page virt-resize(1). let insize = g#blockdev_getsize64 "/dev/sda" in let outsize = g#blockdev_getsize64 "/dev/sdb" in debug "%s size %Ld bytes" (fst infile) insize; - debug "%s size %Ld bytes" outfile outsize; + debug "%s size %Ld bytes" (fst outfile) outsize; sectsize, insize, outsize in let max_bootloader = @@ -390,7 +406,7 @@ read the man page virt-resize(1). (fst infile) insize; if outsize <...

...ill not work, as stats is a base package. It comes with R, and can't be changed. The stats package should never be missing in a proper install of R. Duncan Murdoch > Let we know about your Sys.info() > Karim > > On Fri, Jan 12, 2018 at 5:37 PM, imane hajar <imane.chafiki.fst at gmail.com> > wrote: > >> hello , >> >> i am so sorry , i figure it out. >> >> im sending this msj to the moderator to stop the approval of the mail . >> >> have a good day. >> >> >> 2018-01-12 15:42 GMT+00:00 imane hajar <i...

...296r 3 at 416B-phi 4 at 472r Merged to stack int: SS#0 [16r,592B:0) 0 at x hoisted: 16r STbo %vreg19, <fi#0> Result just prior to rewriting: 20B STbo %vreg19, <fi#0> 24B STbo %vreg19<kill>, <fi#0> --- Original code is like this: int foo(int fst, int snd, int *links) { int ptr; for (ptr = fst; ptr != 0; ptr = links[ptr]) mrglist(); for (ptr = snd; ptr != 0; ptr = links[ptr]) cpylist(); } Without spill hoisting, it spills links in each loop separately into fi#0, but with it, it moves both spills up. In architectures like AARC...

...12sum" > in > - > let cmd = > match tar with > | None -> > @@ -66,9 +65,17 @@ let verify_checksum csum ?tar filename = > | [] -> > error (f_"%s did not return any output") prog > | line :: _ -> > - let csum_actual = fst (String.split " " line) in > - if csum_ref <> csum_actual then > - raise (Mismatched_checksum (csum, csum_actual)) > + fst (String.split " " line) > + > +let compute_checksum csum_type ?tar filename = > + do_compute_checksum (of_string csum_ty...

...e to analyze the data and advise if there is an issue with my system? This is a completely fresh install. From user at localhost.srv.net Tue Jan 17 08:11:56 2012 Return-Path: <user at localhost.srv.net> X-Original-To: root at localhost Delivered-To: root at localhost.srv.net Received: by fst.srv.net (Postfix, from userid 0) id 6F02E2A0078; Tue, 17 Jan 2012 08:11:56 -0500 (EST) Date: Tue, 17 Jan 2012 08:11:56 -0500 From: user at localhost.srv.net To: root at localhost.srv.net Subject: [abrt] full crash report Message-ID: <4f15739c.MHhrv8Xn0YkMj8Xp%user at localhost> User-...

...age. It comes with R, and > can't be changed. The stats package should never be missing in a proper > install of R. > > Duncan Murdoch > > > Let we know about your Sys.info() >> Karim >> >> On Fri, Jan 12, 2018 at 5:37 PM, imane hajar <imane.chafiki.fst at gmail.com >> > >> wrote: >> >> hello , >>> >>> i am so sorry , i figure it out. >>> >>> im sending this msj to the moderator to stop the approval of the mail . >>> >>> have a good day. >>> >>> >...