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fritz
2011 Jan 03
0
Using PCA to correct p-values from snpMatrix
...xample snp data, 1 = allele A, -1 = allele B, 0 = hetero
snp.data = matrix(
c(0,1,0,-1,-1,1,1,-1,0,1,1,0,0,1,0,-1,-1,NA,0,-1,0,0,1,0),
nrow=3,
dimnames = list(
c("bob", "frita", "trudy"),
c("snp1", "snp2", "snp3", "snp4", "snp5","snp6", "snp7",
"snp8")
)
)
# phenotype data - resistant or susceptible to zombie infection
pheno...