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fpdma
2011 Nov 09
3
R to automate scatter plots
...<- read.csv(files[i])
# I want to name the pdf the same name as the object with a .pdf
extention here I think it will be file[i].csv.pdf
# I don't know how to use regex in R I could
readLines(objectnames.txt) and loop through those as well
pdf("data.pdf")
plot(data$fpkma,data$fpkmb, main="Scatter plot of
data",xlab="FPKM of First Time Point",ylab="FPKM of Second Time Point")
dev.off()
}
# change back to the original directory
setwd(initial.dir)
############################################################
the command I have bee...