search for: fpicflag

Full_Name: Danny van Dyk Version: R-2.2.0 OS: Gentoo/AMD64 Submission from: (NULL) (83.129.50.65) I have successfully compiled R-2.2.0 using ifc-9.0.026 on my x86_64 box. The only (minor) change that hade to be made was adding fpicflags="-fPIC" to configure.ac in case F77 matches either "ifc" (old name) or "ifort" (new name). Please apply following patch: dvandyk at phi trunk $ svn diff Index: configure.ac =================================================================== --- configure.ac...

...eg/src' In addition, I got the following error messages in this directory on the latest attempt: g77 -O2 -PIC -c loessf.f -o loessf.o gcc: unrecognized option `-PIC' g77 -O2 -PIC -c ppr.f -o ppr.o gcc: unrecognized option `-PIC' ... In config.site, I specifically requested the option FPICFLAGS=-fPIC, consistent with CPICFLAGS. I also set SHLIBLDFLAGS=-G in config.site. Furthermore, no errors or warnings about setting these flags in ./configure were encountered, since it (finally) found xmkmf. >From the man page, -w is a legitimate option for Gnu make (gmake on this system), so I...

...shared libraries. I'd like to use statically linked libraries instead. Nothing I have tried has worked as measured by executing the command "ldd R.binary" to see whether it references the shared libraries or not. This is what I've tried: 1) Modified config.site to uncomment the FPICFLAGS line and set the flag to the following variations: FPICFLAGS= FPICFLAGS="" FPICFLAGS=" " 2) Set FPICFLAGS as an environment variable before running configure. 3) Modified all Makefiles (after configure) to remove references to -PIC. This builds OK but still sh...

Full_Name: Reinhold Bader Version: 2.1.0 OS: SLES 9 Submission from: (NULL) (129.187.48.1) I tried to build R using the Intel compilers (icc, ifort) and the Math Kernel Libraries for BLAS/LAPACK Optimizations used were -O3, and the FPICFLAGS="-fpic" was exported. The build failed with the following error message: ... dumping R code in package 'methods' Saving namespace image ... initializing class and method definitions now ...Error in makePrototypeFromClassDef(properties, ClassDef, immediate, where) : in ma...

...====== --- configure (revision 43265) +++ configure (working copy) @@ -32806,7 +32806,7 @@ cpicflags="-fPIC" ;; *) - cpicflags="-fpic" + cpicflags="-fPIC" ;; esac shlib_ldflags="-shared" @@ -32817,7 +32817,7 @@ fpicflags="-fPIC" ;; *) - fpicflags="-fpic" + fpicflags="-fPIC" ;; esac fi @@ -32827,7 +32827,7 @@ cxxpicflags="-fPIC" ;; *) - cxxpicflags="-fpic" + cxxpicflags="-fPIC" ;; esac...

...compiled (it was using Sun make instead). The solution to this problem is to do the following: (a) insert a line MAKE = gmake in config.site; alternatively, set # env MAKE=gmake ./configure at the shell prompt (or setenv ... from the C shell). (b) in Makeconf.in, change FPICFLAGS = @FPICFLAGS@ to FPICFLAGS = @CPICFLAGS@, so that both FPICFLAGS and CPICFLAGS are the same (c) make the same change in etc/Makeconf.in If installing as su, you also need to make sure that /usr/openwin/bin is on the SUPATH; if not, you need to edit /etc/default/su as superuser. Otherwise,...

Hello, I am trying to install R on Suse linux 10.1. To get configure to run correctly, I had to set FPICFLAGS=fPIC. R is now configured for i686-pc-linux-gnu Source directory: . Installation directory: /usr/local C compiler: gcc -std=gnu99 -g -O2 Fortran 77 compiler: g77 -g C++ compiler: g++ -g -O2 Fortran 90/95 compiler: g77 -g Obj-C...

Full_Name: Sigbert Klinke Version: 2.1.1 OS: Suse Linux 10.0 (Full DVD) Submission from: (NULL) (141.20.100.252) Suse 10.0 installs only a Fortran 95 compiler with g77 compability mode. Using this leads in "configure" to an abortion with problems about "FPICFLAGS". Deinstalling g77 compatiblity mode, using f2c, compiles R. But after calling R() the program shows its entrance message and then hangs up, using 100% of the processor capacity. What finally works on my computer was setting a softlink from /usr/bin/g77 to gfortran such that the fortran 95 c...

Hi I hope this is the right list for the question. I want to install R from source under SUSE 10. When executing ./Configure, I get the following error message: checking for xmkmf... /usr/X11R6/bin/xmkmf configure: WARNING: I could not determine FPICFLAGS. configure: error: See the file INSTALL for more information. and it taborts. Consequently, make does not work. Any ideas? Rainer

Hello, I am trying to install R on Suse linux 10.1. To get configure to run correctly, I had to set FPICFLAGS=fPIC. R is now configured for i686-pc-linux-gnu Source directory: . Installation directory: /usr/local C compiler: gcc -std=gnu99 -g -O2 Fortran 77 compiler: g77 -g C++ compiler: g++ -g -O2 Fortran 90/95 compiler: g77 -g Obj-C...

I am building from source on RHEL 4 and have run into a problem while running "make check": running code in 'lapack.R' ...make[3]: *** [lapack.Rout] Error 1 make[3]: Leaving directory `/opt/R/R-2.9.1/tests' make[2]: *** [test-Specific] Error 2 make[2]: Leaving directory `/opt/R/R-2.9.1/tests' make[1]: *** [test-all-basics] Error 1 make[1]: Leaving

...yes checking whether g++ accepts -M for generating dependencies... yes checking whether g++ supports -c -o FILE.lo... yes checking whether gcc accepts -mieee-fp... yes checking whether g++ accepts -mieee-fp... yes checking for xmkmf... /usr/X11R6/bin/xmkmf configure: WARNING: I could not determine FPICFLAGS. configure: error: See the file INSTALL for more information. ------------------------------------------------------------ Mohan Parigi Director of Information Technology Johns Hopkins University Pulmonary and Critical Care Medicine 5501 Hopkins Bayview Circle, 5B.76 Baltimore MD 21224 Voice: 410...

...el-c-compiler-and-intel-mkl-on-linux# export ICC_OPT="-mkl -xHOST -fp-model strict" export CC="icc $ICC_OPT" export CXX="icpc $ICC_OPT" export FC="ifort -mkl -xHOST" export F77="ifort -mkl -xHOST" export FPICFLAGS=" -fPIC" export AR=xiar export LD=xild export MKL="-lmkl_gf_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread" ./configure --with-x=no --with-blas=-lmkl

...t;runs fine as well. The configure flags are configure --enable-R-shlib --with-tcl-config=/Library/Frameworks/Tcl.framework/tclConfig.sh --with-tk-config=/Library/Frameworks/Tk.framework/tkConfig.sh --with-blas='-framework vecLib' --with-lapack --with-aqua In the environment I have FPICFLAGS=-fno-common LDFLAGS=-lcc_dynamic CPPFLAGS=-D__DEBUGGING__ TCLTK_LIBS=-framework Tcl -framework Tk TCLTK_CPPFLAGS=-I/Library/Frameworks/Tcl.framework/Versions/Current/ Headers -I/Library/Frameworks/Tk.framework/Versions/Current/Headers I know that the two TCLTK variables (strangely enough), the D...

Hi, I cannot compile R with shared library. I am using Redhad Linux on Dell hardware. Here''s what I am doing: I set ?PICFLAGS in config.site file: CPICFLAGS=-fPIC FPICFLAGS=-fPIC and issue: ./configure --enable-R-shlib --prefix=$HOME/newR make configure finishes with no complaints, the last informative line being: Options enabled: shared R library, shared BLAS, R profiling, Java But make is upset: /usr/bin/ld: CConverters.o: relocation R_X86_64_32S...

Hi, I'm a sysadmin who's been tasked with installing R on our 1000-node compute cluster. I have licences for the Intel C and FORTRAN compilers, so I'm using the following to compile: CFLAGS="-O2 -axWK" FFLAGS=$CFLAGS CXXFLAGS=$CFLAGS CC=icc F77=ifort CXX=icc FPICFLAGS=-fpic ./configure --without-x --without-tcltk The compilation seems to go OK, with a few warnings. What concerns me is when I run the make check - how long should this take? I've had one running for over 12 hours now, and it's still on: running code in 'base-Ex.R' ... and h...

...king Tcl/Tk code works... no This is with configure --enable-R-shlib --with-tcl-config=/Library/Frameworks/Tcl.framework/tclConfig.sh --with-tk-config=/Library/Frameworks/Tk.framework/tkConfig.sh --with-blas='-framework vecLib' --with-lapack --with-aqua and with in the environment FPICFLAGS=-fno-common LDFLAGS=-lcc_dynamic CPPFLAGS=-D__DEBUGGING__ TCLTK_LIBS=/Library/Frameworks/Tcl.framework/Versions/Current /Library/Frameworks/Tk.framework/Versions/Current TCLTK_CPPFLAGS=/Library/Frameworks/Tcl.framework/Versions/Current/ Headers /Library/Frameworks/Tk.framework/Versions/Current/...

...oto BLAS rather than the R BLAS. Now I want to make icc and ifort work... So I tried this: ./configure CC=icc CFLAGS='-O3 -mp' CPPFLAGS=-I/opt/intel/cce/10.1.015/include/ F77=ifort CXX=icc CXXFLAGS='-O3 -mp' FFLAGS='-C90 -w90 -w95 -mp' CPICFLAGS=-shared CXXPICFLAGS=-shared FPICFLAGS=-shared SHLIB_LDFLAGS=-shared SHLIB_CXXLDFLAGS=-shared --with-blas="-L/usr/lib64/GotoBLAS -lgoto_penrynp-r1.26 -lpthread" I get six purported "bugs" in the config.log file (attached), but I hope there is something I've overlooked in the past week of agony. I have had simil...

...e script seems to have a bug, even if you make your own configure script with autoconf. Perhaps it's only a typo, perhaps it's an error of autoconf. So you have to do some things manually: 1) run configure : (you have to adjust the paths) env CPICFLAGS=-shared CXXPICFLAGS=-shared FPICFLAGS=-shared SHLIB_LDFLAGS=-shared ./configure CC=icc CFLAGS=-O2 CPPFLAGS=-I/opt/intel/compiler70/ia32/include F77=ifc CXX=icc CXXFLAGS=O2 FFLAGS=-C90 2) delete a wrong path in some Makefiles: -L/usr/local/lib" The quotation mark is the wrong thing. Delete it! You can search all the files c...

...Makeconf is I# Generated automatically from Makeconf.in by configure. # # ${R_HOME}/etc/Makeconf CC = gcc CFLAGS = -g -O2 CPICFLAGS = -fPIC CPPFLAGS = DEFS = -DHAVE_CONFIG_H FC = g77 FFLAGS = -g -O2 FLIBS = -L/usr/lib/gcc-lib/i386-redhat-linux/egcs-2.91.66 -L/usr/i386-redhat-linux/lib -lg2c -lm FPICFLAGS = -fPIC F2C = F2CFLAGS = SHLIBEXT = so SHLIBLD = gcc SHLIBLDFLAGS = -shared R_XTRA_CFLAGS = -mieee-fp R_XTRA_CPPFLAGS = -I$(R_HOME)/include R_XTRA_FFLAGS = ALL_CPPFLAGS = $(R_XTRA_CPPFLAGS) $(CPPFLAGS) $(DEFS) ALL_CFLAGS = $(R_XTRA_CFLAGS) $(CPICFLAGS) $(CFLAGS) ALL_FFLAGS = $(R_XTRA_FFLAGS)...