Displaying 2 results from an estimated 2 matches for "flowset".
2011 Oct 04
0
Adding multiple gates/filters in densityplot
... <- rectangleGate(filterId="Filter1", "FSC-H" = c(0, 200))
Filter2 <- rectangleGate(filterId="Filter1", "FSC-H" = c(300, 400))
xyplot( `SSC-H` ~ `FSC-H` , data=GvHD[[1]],
panel = function(...) {
panel.xyplot.flowset(...)
glpolygon( Filter1 )
glpolygon( Filter2 )
}
)
densityplot( ~ `FSC-H`, data=GvHD[[1]],
panel = function(...) {
panel.densityplot.flowset(...)
glpolygon( Filter1 )
glpolygon( Filter2 )
}
)
The g...
2011 Nov 28
1
Running Shell Script with R
...'ve checked out the
Intro to R Manual and a host of other websites, but I still can't get the
script to work when I submit the job to the cluster.
Here is my main R code:
##Load Libraries
##...
## Load Time Data
Args <- commandArgs(trailingOnly = TRUE);
print(Args);
timeDat <- read.flowSet(files=NULL, path=Args[1]);
save(timeDat,file = Args[2]);
Here is my shell script file
#!/bin/bash
#$ -cwd
#$ -q all.q
R --slave --vanilla --file="/home/jpura/Desktop/FDA_Trial_Data/testscript.R"
--args "/home/jpura/Desktop/FDA_Trial_Data/Experiment_1/"
"/home/jpura/Desk...